Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02954 ATGGGTGGATCAATTTCAAAACGGGGGAGCTCTAGGCAACGTTCATCCTCAAGGTCCACTTCGCGTTCTTTGTTTCCTCAATATCAATCACCTTATTTGCCACAAAGCCAAGATCATGGGCCTTTGGGGTATAGTGGGTATCCATCTCAAAGCTATGGTGGTGGTGGTCATGCTCCAGAGCAAAGAAACAGATCAGACAGGAAGTATTCTAGGATAGGTGATAACTATAATAGCTTGGACCAGGTAACTGAGGCTCTGGCAAATGCTGGCCTAGAGTCTTCCAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAGTGGACAGGTGGAAGATCATTTCAAAGGAGATGCCTACATCACATCGGGCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTGTCTACCTTTGATGAGGATAACTTAATTCCCTGTTTTGGATTTGGAGATGCATCAACACATGACCAGGAAGTTTTTAGTTTCTTTCCTGATGAGAGACTTTGTCATGGATTTGAAGAAGTGTTGACACGGTACAGGGAATTGGTCCCTCAATTAAAGCTTGCTGGACCAACATCATTCGCCCCAATCATTGAGATGGCAATTACCGTGGTTGAGCAAAGTGGAGGCCAATACCATGTCTTATTGATCATAGCAGATGGACAGGTGACAAGAAGTGTTGACACCGAGCATGGACAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTTAAAGCCAGTGAATATCCCCTTTCAATCATATTAGTTGGAGTTGGAGATGGACCATGGGACATGATGAAAGAATTTGATGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTCGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAGCTGAGTTTGCACTTTCTGCCTTGATGGAAATACCCTCCCAGTACAAGGCAACAATAGAACTTCATATATTGGGAACTTGTAGAGGGAAAGATATAGACAGGTTCCCTCTACCACCACCTCTATATGGTGCAGCATCTTTCAACTCCCCAAAAACTTCCCGTCAAAACAGTTTTCGTCCCAGTGCACCATCTCACAGACAAGATATTGGCATGAATCCTCCTGCAAGTTCTGCTTCTGATAATCAGCTTTGTCCCATTTGCCTCTCCAGTCCTAAGGATATGGCCTTTGGTTGCGGGCATCAGACATGCTGTGAGTGTGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG 1305 0.4276 MGGSISKRGSSRQRSSSRSTSRSLFPQYQSPYLPQSQDHGPLGYSGYPSQSYGGGGHAPEQRNRSDRKYSRIGDNYNSLDQVTEALANAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQEVFSFFPDERLCHGFEEVLTRYRELVPQLKLAGPTSFAPIIEMAITVVEQSGGQYHVLLIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKEAEFALSALMEIPSQYKATIELHILGTCRGKDIDRFPLPPPLYGAASFNSPKTSRQNSFRPSAPSHRQDIGMNPPASSASDNQLCPICLSSPKDMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02954 434 SUPERFAMILY RING/U-box 380 429 - -
Seca4g02954 434 MobiDBLite consensus disorder prediction 353 370 - -
Seca4g02954 434 ProSiteProfiles Zinc finger RING-type profile. 391 424 IPR001841 -
Seca4g02954 434 Pfam Copine 118 331 IPR010734 -
Seca4g02954 434 SMART VWA_4 93 296 IPR002035 -
Seca4g02954 434 Pfam Zinc finger, C3HC4 type (RING finger) 388 429 - -
Seca4g02954 434 PANTHER COPINE FAMILY PROTEIN 1 11 411 - -
Seca4g02954 434 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g02954 434 MobiDBLite consensus disorder prediction 353 384 - -
Seca4g02954 434 Coils Coil 424 434 - -
Seca4g02954 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 434 IPR013083 -
Seca4g02954 434 MobiDBLite consensus disorder prediction 1 72 - -
Seca4g02954 434 SUPERFAMILY vWA-like 94 277 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02954 Seca-Chr4 50674926 50678910 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02954 K16280 - gmx:100809850 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02954 4 50674926 50678910 Seca4g02954 4 50674926 50678910 ECH