Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02946 ATGACCATAAACTCTGTCCCTAGCATCAGAGACGAGTGTCTCACGGTGCGTGGCAAGGCCATTTTGACTCATGTACCCAGTAACATTATTATTACACCCATCAGCAGTGAAGGAGCTTTTCTTGGTGCAACATCACTAACTTCAAGCAGTTGTCATGCCTTCTGCCTTGGAGTTCTCAAGGGGTTCAGGTTAACATGTCTGTTCAGATTCAAAATATGGTGGATGATACCAGGTTATGGAGAATCAGGCCGTGATGTGCCAACAGAAACTCAAATGCTTCTCTTGGAAGCAAGGGATGAGACCATCATCCAAGAAAAATTCTGTGAGCCAACAAAGGAGGGAACTTTCTATATTCTCTTGTTACCCGTTTTGGATGGACAGTTCAGGACTAGTTTGCAAGGGACAATAATAGATGAGCTTGAGTTTTGCGTTGAAAGTGGTGATCCCAATGTGGAAACCATGAAGGTAACAGAAGCAGTTTATGTAAATTCAGGGGACAACCCATTTAAGCTCATAAGAAATTCCATGAAGATATTGGAGAAGCACAAAGGAACATTTAGACACATAGATAACAAAGAGTTGCCAGCACATGTAGACTGGTTCGGATGGAACACCTGGGATGCATTTTACACCAATGTCAGTGCACAAGGAATTGATGAAGGTCTTAAAAGGTTCTCAGCTGGAGGCTGCCTCCCAAAATGGGTATGCATTGATGATGGATGGCAAAACACAACACAAGAAAACAGTGAACTACCACTGGAAAAAGCAAAGTTCGGATCCAGACTACAAAATCTAAAGGAAAATGCTAAGTTCAGGGGCTCAGGAAAGGGTTATGCTGATCTGTATCAGTTTATCAGAACCATTAAACAGAAATATGGGCTAAAATATGTATATGCTTGGCATGCTTTACTCGGTTATTGGTCAGGAGTAGATCCGACATCTGATGAAATGAGAAAATACAACCCCAAGATTGTATCTGTAGTTCAGTCCCCTGGGAACCTAAGCCATGTTGTATGTGATGTAGTTCAATGTATAGAAAAAGGAGGAGTGGGATTAATTGATCCTTTGAAAATCAATGAGTTTTATGATGATCTCCATGGGTACCTTGCACGTTGTGGTGTTGATGGAGTGAAGGTAGATGTTCAATGCATACTGGACACCCTTGGTTCTGGTTATGGAGGGAGGGTCACACTGACTAAACGTTTTCAAGAAGCTCTAGAAGATTCAGTTCTGAAAAACTTTGGAGGCAATAACCTTATTTGCTCAATGAGTACCAACAACGATTACATATTCAGCTCAAAGAGAAGTGCTGCTGCTAGAGCTTCTGAGGATTTCATGCCAAATGAACCAACATTTCAGACTCTGCATGTAGCTGCTGTAGCCTTCAACAGCCTTTTACTAGGGGAGATAGTTGTTCCTGATTGGGACATGTTCTATAGCACACATTACACAGCAGAGTTTCATGCAGCAGCAAGAGCATTGGGTGGTTGTCCAGTATATGTTAGTGACAAGCCTGGTCATCATGATGTGAACATAATCAGAAAGCTTGTACTTCCTGATGGGTCCATTCTGAGAGCCAAACATGCTGGTCGTCCAACTCGTGATTGTTTATTTGATGACCCTGTTATGGATGGGAAAAGTCTACTCAAAATTTGGAACTTGAACAAGCTATGTGGGATAGTTGGTATATTCAATTGCCAAAGAGCTGGAAAATGGCCTCCCACACCAGGTGCTATATTCCTATCAGACCCAGCTTTGGAATCTTTAACCATTACAGGTTCAATTAGTGCAGTAGATGTTGATTCACTTCATGAGGTTGCTGGTGAGGATTGGAATGGAGACTCTGCAGTTTATGCTTTCAATTCAGGAAAACTTACTAAATTGCCCAAGGGAAGAATTATTGAAGTCTCCTTGGGAGTTCTAAAATGTGAGGTCTTCACCATTTCTCCTATTAGGGTATTTGGTCCAAGACTAGAATTTGCTCCAATTGGATTGCTTGATATGTTCAACTCAGGAGGAGCATTAACTGAAGGACTTAAGAGCTATCGAAACCAAACTGGACATGTTGTAGAAATCCAAGTACGAGGATGCGGTCGTTTTGGAGCTTACTCCAATACTAAACCAAGCTATTGTCTAATGGACAAAGTAGAGGTGGACTTCACATACCATGCTAGCAATGGCTTACTATCTTGTGAGCTTCTAGGTGATTGTAAAGTTAGGGGAGTTGAAGTTGTTTATCAAGATTTTGATGTTACATGCTCCGAGGACTTCAGTGTTTCCTCCATTAGTCTTTGA 2295 0.4161 MTINSVPSIRDECLTVRGKAILTHVPSNIIITPISSEGAFLGATSLTSSSCHAFCLGVLKGFRLTCLFRFKIWWMIPGYGESGRDVPTETQMLLLEARDETIIQEKFCEPTKEGTFYILLLPVLDGQFRTSLQGTIIDELEFCVESGDPNVETMKVTEAVYVNSGDNPFKLIRNSMKILEKHKGTFRHIDNKELPAHVDWFGWNTWDAFYTNVSAQGIDEGLKRFSAGGCLPKWVCIDDGWQNTTQENSELPLEKAKFGSRLQNLKENAKFRGSGKGYADLYQFIRTIKQKYGLKYVYAWHALLGYWSGVDPTSDEMRKYNPKIVSVVQSPGNLSHVVCDVVQCIEKGGVGLIDPLKINEFYDDLHGYLARCGVDGVKVDVQCILDTLGSGYGGRVTLTKRFQEALEDSVLKNFGGNNLICSMSTNNDYIFSSKRSAAARASEDFMPNEPTFQTLHVAAVAFNSLLLGEIVVPDWDMFYSTHYTAEFHAAARALGGCPVYVSDKPGHHDVNIIRKLVLPDGSILRAKHAGRPTRDCLFDDPVMDGKSLLKIWNLNKLCGIVGIFNCQRAGKWPPTPGAIFLSDPALESLTITGSISAVDVDSLHEVAGEDWNGDSAVYAFNSGKLTKLPKGRIIEVSLGVLKCEVFTISPIRVFGPRLEFAPIGLLDMFNSGGALTEGLKSYRNQTGHVVEIQVRGCGRFGAYSNTKPSYCLMDKVEVDFTYHASNGLLSCELLGDCKVRGVEVVYQDFDVTCSEDFSVSSISL. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02946 764 PANTHER - 9 738 IPR008811 -
Seca4g02946 764 Pfam Raffinose synthase or seed imbibition protein Sip1 9 732 IPR008811 -
Seca4g02946 764 SUPERFAMILY (Trans)glycosidases 196 514 IPR017853 -
Seca4g02946 764 Gene3D Aldolase class I 197 516 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02946 Seca-Chr4 50581973 50585528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02946 1 733 Glycoside Hydrolase AT1G55740 45.722 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02946 - - lang:109327884 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02946 4 50581973 50585528 Seca4g02946 4 50581973 50585528 ECH