Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02917 ATGGCGGAGAAGTTGGGAACAGCAGCAGCAGCAGAAGGGAGCCCGAACCCGAAGGGTTCTCAGTCCCACCCTGCCACTTCGAAGCTCGTCGTTTTGGCTGACCTCAACGTCGATCCTCCTGAAGCCGAAGCTGACGACGACGATTCTTCACTTGTCCTTCCTTCGCAAATTACCAGGTTGACAAATGACGAAAACAGTCAAGATAAGAGTTTGTTGTCCAAAGACACTGATAGCATTGAAGGCGAAGGTAAAAAGTCGAACAAACTGGGGAAATGTCGCTCTAGACCTAGCAAGGCAGATTCTTCTCTTGATTGTGGAGCTGATGCAGATGGTGATCAACATGTTCAGGGGGCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGCATGAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCTAAAAATGCCCATGCTCATTTTATACTCGGCCAGATGTACCAAAGATTAAACCAACCTCAGAAGGCTGTATTGGCTTATGAGAAGGCAGAAGAGATCTTACTCAGGCCTGAGGTTGAGATTGATAGACCAGAGCTTCTTTCTCTGGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCATCAGAAAATAGTTCTGATAAAGAACTTGAACCTCACGAACTTGAGGAAATTCTTTCAAAACTGAAAGAGTCAGTGCAATCAGATATCAGACAGGCAGCTGTATGGAATACACTAGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGGCCATTGCACCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTCAAATTGGGAATTTGGAATTATCTGCAAAATGTTTCCAAGAGTTGATCCTAAAAGATCAAAACCATCCTGCAGCTTTGGTCAACTATGCTGCCCTTCTTTTGTGTAAATATGCTTCGGTTGTAGCAGGTGCTGGTGCAAGTGCTGCTGAAGGTGCTTTGGCAGATCAGGTCATGGCAGCTAATGTTGCTAAGGAATGTTTGTTAGCTGCAATTAAAGCAGACGGCAAATCAGCCCATATCTGGGCTAATCTTGCCTATGCATTTTCTATTACTGGTGATCATCGAAGTTCCAGCAAATGCTTGGAGAAGGCAGCAAAACTGGAACCCAATTGCATGTCTACTAGGTATGCTGTTGCTATCCATCGAATCAAGGAGGCAGAAAGATCTCAGGATCCTAGTGAACTGCTTTCATGTGCTGGAAATGAGATGGCTTCCATAATAAGAGATGGCGATTCATCCCTGGTTGAGCTTCCAATAGCATGGGCCGGGCTAGCCATGGTTCACAAGGCTCAGCATGAGATAGCAGCAGCATATGAAAGTGAACAGCATGGGCTGACAGAGATTGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCCATTGCAGAAGATCCAGATGATGCTATACAGTGGCACCAACTTGGCGTTCATAGTCTTTGTGCTCGGCAATTCAAAACATCACAGAAATACCTCAAAGCTGCTGTTGCATGTGACAAGAATTGCAGCTATTCATGGACTAACCTTGGTGTCTCACTTCAGTTATCAGAAGAACCATCACAAGCTGAAGAAGTATACAAGCAAGCTTTGTCTTTGGCTCCAACACAACAAGCACATGCTATACTATCCAATTTGGGAATTCTCTATCGCCATCAGAAAAAATATCAACGTGCTAAGGCTATGTTTACAAAGTCTCTTGAATTACAGCCTGGGTATGCTCCTGCATTCAACAATCTGGGTCTTGTGTTTGTTGCTGAGGGTCTGTTGGAAGAGGCCAAGTATTGTTTTGACAAGGCCCTCCAAGCAGATCCATTGCTGGATGCAGCCAAGTCTAACTTAATTAAGGTGGTCACGATGTCAAAGTTATGCAAAGGCCTCTCTTCGTCCCATCTTAAAGAATTGGCTATGGCTGCAAGTAGCATCATCTCTGTTTCCTCTGCTACACTCTTGAGTCCAACAACTCAACCAAAAACGCAAAGCCTCCTAAAACACAAGGACCATGAACACATTCCAACATCCTCTTTCATGGGCACAGCAACACTTAAGATATCATCAACACCAACAACAACATTGGGAGTTGTCACAAGGCGTAAGTTGAGTTGCTCAGCCTCAGCTTCTTCCTCTTCCACTCTTCCCTCGGCTCTTCTTTTTGACTGTGACGGAGTCCTTGTAGACACCGAGAAAGATGGCCACCGCATATCTTTCAACGAAACCTTCCAAGAGAAAGAACTAGGCGTTACCTGGGACGTGGACTTGTACGGGGAGTTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCATACTTTAACAAGACAGGTTGGCCTGCGAATGCCCCCAAAGGTGAACAAGAAAGAAAAGATTTCATAGCTTCACTCCACAAGCGAAAGACTGAACTATTCATGGCCCTTATTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTATTGACCAGGCTTTAGCTCAAGGAGTCAATGTTGCTGTTTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAAAGAGCAGAAAAAATGAAGATATTTGCAGGAGATGTGGTTCCCCGCAAAAAGCCTGATCCAGCCATCTATCTACTAGCAGCCAGCACTCTGGGTGTTGAACCTTCAAGATGTGTTGTGGTGGAGGACAGTGCCATAGGCCTAGCAGCTGCTAAAGGAGCTGGGATGAAATGCATAGTAACAAAGAGCGGCTATACAGCAGATGAAGATTTCTTAAATGCAGATGCAGTCTTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTCTGTGGTAGCCTTCTTGAGAAGCAATACGTCAGCTAG 2922 0.45 MAEKLGTAAAAEGSPNPKGSQSHPATSKLVVLADLNVDPPEAEADDDDSSLVLPSQITRLTNDENSQDKSLLSKDTDSIEGEGKKSNKLGKCRSRPSKADSSLDCGADADGDQHVQGAPSSREEKVSSMKTGLVHVARKMPKNAHAHFILGQMYQRLNQPQKAVLAYEKAEEILLRPEVEIDRPELLSLVQIHHAQCLILESSSENSSDKELEPHELEEILSKLKESVQSDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPAALVNYAALLLCKYASVVAGAGASAAEGALADQVMAANVAKECLLAAIKADGKSAHIWANLAYAFSITGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPSELLSCAGNEMASIIRDGDSSLVELPIAWAGLAMVHKAQHEIAAAYESEQHGLTEIEERAVCSLKQAIAEDPDDAIQWHQLGVHSLCARQFKTSQKYLKAAVACDKNCSYSWTNLGVSLQLSEEPSQAEEVYKQALSLAPTQQAHAILSNLGILYRHQKKYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFDKALQADPLLDAAKSNLIKVVTMSKLCKGLSSSHLKELAMAASSIISVSSATLLSPTTQPKTQSLLKHKDHEHIPTSSFMGTATLKISSTPTTTLGVVTRRKLSCSASASSSSTLPSALLFDCDGVLVDTEKDGHRISFNETFQEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPANAPKGEQERKDFIASLHKRKTELFMALIEKKLLPLRPGVAKLIDQALAQGVNVAVCSTSNEKAVSAIVSFLLGPERAEKMKIFAGDVVPRKKPDPAIYLLAASTLGVEPSRCVVVEDSAIGLAAAKGAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS. 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02917 973 ProSiteProfiles TPR repeat profile. 521 554 IPR019734 GO:0005515
Seca4g02917 973 FunFam HAD family hydrolase 824 946 - -
Seca4g02917 973 Gene3D Tetratricopeptide repeat domain 203 318 IPR011990 GO:0005515
Seca4g02917 973 Gene3D - 732 948 IPR023214 -
Seca4g02917 973 Pfam Tetratricopeptide repeat 523 587 - -
Seca4g02917 973 ProSiteProfiles TPR repeat profile. 235 268 IPR019734 GO:0005515
Seca4g02917 973 Pfam Tetratricopeptide repeat 245 304 - -
Seca4g02917 973 SMART tpr_5 269 302 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 521 554 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 591 624 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 235 268 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 438 471 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 557 590 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 144 177 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 358 391 IPR019734 GO:0005515
Seca4g02917 973 SMART tpr_5 487 520 IPR019734 GO:0005515
Seca4g02917 973 CDD HAD_CbbY-like 735 932 - -
Seca4g02917 973 Gene3D Tetratricopeptide repeat domain 331 425 IPR011990 GO:0005515
Seca4g02917 973 SUPERFAMILY HAD-like 731 948 IPR036412 -
Seca4g02917 973 Pfam Tetratricopeptide repeat 358 391 IPR019734 GO:0005515
Seca4g02917 973 Pfam Tetratricopeptide repeat 144 173 IPR019734 GO:0005515
Seca4g02917 973 Pfam Tetratricopeptide repeat 591 622 IPR019734 GO:0005515
Seca4g02917 973 Gene3D Putative phosphatase; domain 2 744 828 IPR023198 -
Seca4g02917 973 Gene3D Tetratricopeptide repeat domain 131 202 IPR011990 GO:0005515
Seca4g02917 973 Gene3D Tetratricopeptide repeat domain 470 556 IPR011990 GO:0005515
Seca4g02917 973 ProSiteProfiles TPR repeat profile. 557 590 IPR019734 GO:0005515
Seca4g02917 973 SUPERFAMILY TPR-like 440 635 IPR011990 GO:0005515
Seca4g02917 973 ProSiteProfiles TPR repeat profile. 358 391 IPR019734 GO:0005515
Seca4g02917 973 ProSiteProfiles TPR repeat profile. 591 624 IPR019734 GO:0005515
Seca4g02917 973 SFLD phosphoglycolate phosphatase 728 956 - -
Seca4g02917 973 MobiDBLite consensus disorder prediction 68 98 - -
Seca4g02917 973 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 24 648 - -
Seca4g02917 973 MobiDBLite consensus disorder prediction 51 67 - -
Seca4g02917 973 SUPERFAMILY TPR-like 141 553 IPR011990 GO:0005515
Seca4g02917 973 Pfam Haloacid dehalogenase-like hydrolase 733 929 IPR041492 -
Seca4g02917 973 NCBIfam HAD-IA family hydrolase 814 929 IPR006439 -
Seca4g02917 973 MobiDBLite consensus disorder prediction 1 129 - -
Seca4g02917 973 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 728 956 - -
Seca4g02917 973 Gene3D Tetratricopeptide repeat domain 557 660 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02917 Seca-Chr4 50214691 50225674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02917 472 680 Glycosyltransferase AT3G04240 24.242 3.09e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02917 - - gmx:100820184 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02917 4 50214691 50225674 Seca4g02917 4 50214691 50225674 ECH