Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02900 ATGGGGAAGAAGACGAAGAAAGCCGGCAAAGGCAAAGAGAAAACGGAGAGAAAAACTGCAAAAGCTGAGGAGAAGAGAGCTCGCAGAGAGACCAAGAAGCTTTCTCCCGAGGACGACATCGATGCCATTTTGTTGAGTATACAAAAGGAAGAAGCTAAAAAGAAGGAAGTTCACGTTGAAGACAATGTTCCCGCGCCTTCTCCTCGCTCCAACTGCACGCTTACCGTTAATCCCTTGAAAGAGACCGAGTTGATCCTCTATGGCGGCGAATTCTACAACGGGAACAAGACTTTCGTCTACGGCGATCTTTACCGGTATGACGTGGAGAAGCTGGAATGGAAATTAATTTCGAGTCCTAATAGTCCTCCTCCTCGCAGTGCTCATCAGGCAGTTGCTTGGAAGAATTATATTTATATTTTTGGTGGTGAATTTACATCTCCAAACCAAGAGCGGTTCCATCATTACAAGGATTTCTGGATGTTGGACCTGAAAACAAATCAGTGGGAACAGCTTAATTTAAAAGGGTGTCCGAGTCCGCGATCGGGTCATCGAATGGTATTATACAAGCACAAGATCATTCTTTTTGGTGGCTTCTATGATACTCTTAGAGAAGTGAGGTACTACAATGATCTATTCGTGTTTGACCTTGATCAATTTAAGTGGCAAGAAATAAAGCCTAAGCCTGGAGCAATGTGGCCAACTGCGCGTAGTGGTTTTCAATTATTTGTTTACCAAGATGATATTTTTTTGTATGGTGGCTATTCAAAAGAAGTTTCATCTGATAAGAATGCCTCTGAAAAAGGAATTGTTCATTCAGACATGTGGTCCCTTGATCCTAAGACTTGGGAATGGAACAAGGTTAAGAAAAGTGGAATGCCTCCTGGGCCTCGTGCGGGGTTTTCCATGAGTGTTCATAAGAGGAGGGCTCTGCTATTTGGTGGTGTTGTGGATATAGAAGTTGAAGGTGATGCAATGATGAGCCTTTTCTTGAACGAGCTTTATGGCTTTCAGTTAGACACCAATCGCTGGTATCCTCTGGAGTTAAGAAAGGAGAAGTCAACAAAAGATAAGTTAAAAAAGATCGAACAAAATTCCACTGATGATGTCGACAAGACGGTGAATTCACTGTGTACAGCTAGAGAAGAAACTGAGGATTCAGAGTATGAAGAAAGCAACATTGACGATATATCCCATAATATTGAGTCGAACGTGACTATTAATGATAGTGAGACACTTACCAAATCTAATGGAAAGTCTATGGAGTCTGGTGCTAAATTGGACATTCAGAGTTCTGTGCCTGAGGTAGTGAAGCCTTGTGGACGTATTAATTCATGCATGGCCGTTGGAAGAGATACATTATATATATATGGTGGCATGATGGAGATTAGAGATCGAGAAATCACTCTGGATGACTTGTATTCTCTGAACCTTAGCAAACTTGATGAATGGAAGTGCATTATACCGGCATCAGAGTCTGAATGGGTGGAAGCTTCAGAGGATGATGACGAAGAAGAAAATGAAGATGACGATGAAGATGAATCTGAGGGCAGTAGTACAAGTGATGAGAATGAAGATGATGAGGAAGAGGAGGAGGAGGAGGTGCCCATTCTAACTTAG 1617 0.4224 MGKKTKKAGKGKEKTERKTAKAEEKRARRETKKLSPEDDIDAILLSIQKEEAKKKEVHVEDNVPAPSPRSNCTLTVNPLKETELILYGGEFYNGNKTFVYGDLYRYDVEKLEWKLISSPNSPPPRSAHQAVAWKNYIYIFGGEFTSPNQERFHHYKDFWMLDLKTNQWEQLNLKGCPSPRSGHRMVLYKHKIILFGGFYDTLREVRYYNDLFVFDLDQFKWQEIKPKPGAMWPTARSGFQLFVYQDDIFLYGGYSKEVSSDKNASEKGIVHSDMWSLDPKTWEWNKVKKSGMPPGPRAGFSMSVHKRRALLFGGVVDIEVEGDAMMSLFLNELYGFQLDTNRWYPLELRKEKSTKDKLKKIEQNSTDDVDKTVNSLCTAREETEDSEYEESNIDDISHNIESNVTINDSETLTKSNGKSMESGAKLDIQSSVPEVVKPCGRINSCMAVGRDTLYIYGGMMEIRDREITLDDLYSLNLSKLDEWKCIIPASESEWVEASEDDDEEENEDDDEDESEGSSTSDENEDDEEEEEEEVPILT. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02900 538 SUPERFAMILY Kelch motif 82 485 IPR015915 GO:0005515
Seca4g02900 538 Gene3D - 43 375 IPR015915 GO:0005515
Seca4g02900 538 MobiDBLite consensus disorder prediction 490 538 - -
Seca4g02900 538 MobiDBLite consensus disorder prediction 12 35 - -
Seca4g02900 538 Pfam Kelch motif 235 297 - -
Seca4g02900 538 Pfam Galactose oxidase, central domain 135 187 - -
Seca4g02900 538 Pfam Galactose oxidase, central domain 445 488 - -
Seca4g02900 538 Pfam Galactose oxidase, central domain 68 122 - -
Seca4g02900 538 MobiDBLite consensus disorder prediction 494 538 - -
Seca4g02900 538 Coils Coil 12 32 - -
Seca4g02900 538 MobiDBLite consensus disorder prediction 1 35 - -
Seca4g02900 538 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 1 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02900 Seca-Chr4 49957683 49968006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02900 117 343 Acyl Lipid Metabolism Gene Families AT3G05420 23.750 4.79e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02900 - - lja:Lj1g3v0292630.1 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02900 4 49957683 49968006 Seca4g02900 4 49957683 49968006 ECH