Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02880 ATGCAAATCCTTCAACTTCAAACGTCTTATCTCTTCACTTTCCCTAAACCCTTAAACCCTTCTACTCCACATTTTCACCTTCGCCCTCGTTCTCCGCCTCTTCCCCTCCGCCACCAGCCACTCTCCGGCAACCTCCTCGTCGCCAAGTCCTTCAGCTCCGATGAGTTCCCCGTCGACGAGACCTTCGTCCAGAACTTCAGTCCCCCCAAGGACGATGAGACCGAGAACGAAGCCCGAAGACGCAACTGGATTGAGCGTGGCTGGGCTCCCTGGGAAGAAATCCTCACGCCGGAGGCCGATTTCGCGCGCAAGAGCCTCAACGAAGGCGAAGAGGTTGCTCTCCGTTCTCCGGAAGCCATCGAAGCGTTCAAGATGCTGAACCCTAGGTACCGCAAGAAGAAGATGGAGGAAATGGGATTGACGGAGGAGGAGTATTACCAAAAGCAGTTCGAGATCAAGGGAGAGATTCCGGAGCCGCTGGTGACGAAGTGGGCGGGGCCGCTGGTGGTGCGTTTGGTGCCGCCGCGGGATTGGCCGCCGCGAGGGTGGGAGGTGGATCGGAAGGAACTTGCGTACATTCGGGAAGCGCATAAATGGCAGGCGAGGAGGGTGAGCTTGGAGGAGGTAGAAAATGGAGTGAGAACTGAAACCGATGATGTGTGTTTGGATAGGTACAAGGTGTTTCTGAAGCAGTATAATGAGTGGGTGAAGGCTAACAAGGACAGATTGGAAGAGGAGTCTTATAAGCAAGACCAAGATTATCACCCTGGTAGGCGGAAAAGAGGCAAGGACTACAAGGAAGGCATGTACGAGCTTCCGTTCTATTATCCTGGCCAAATTTGTGTAGGGAAGGTTGTAACTTTGCATCTCTATCAAGGGGCATTTGTTGACATCGGTGGAGTATATGATGGGTGGGTTCCTATAAAGAACAATGATTGGTTTTGGATTCGCCATCATATAAAAGTCGGTATGCACGTCATTGTTGAAATTACGGCAAAGCGAGATCCTTATCGCTTCCGGTTTCCGATTGAACTTCGTTTTGTTGATCCAAATATAGATCATCTGATCTTTAACAAATTTGATTTCCCACCAATATTTGAACGCGATGAAGATACTAATCCAGATGAATTACGGCGTGATTGTGGAAGACCTCCCATTCCTAGAAAAGATCCAGGAGACAAGCCAGAGGAAGAATCTCTATTGTCTAATCACCCATATGTTGATAAGTTGTGGCAGATTAATGTAGCTGAGCAGATTATTTTGAATGATATGGAGATTAATCCTGATAAATATAAAGGTAAAAAGCTATCAGATTTGGTTGATGAAGAAGATTTTGATGAACAAAATGCTGTTGAGTATACAAAAGTTCGTTATAAGAATGCGTTAGTACCGAAAATTACTATGGTGAGTACTATTCTTATTGTAATTTTCAGAGAAGAGCTAATAATCCCTCTTATTCATGTGAAGTCATACAAGTGTAGAGTATAA 1488 0.4644 MQILQLQTSYLFTFPKPLNPSTPHFHLRPRSPPLPLRHQPLSGNLLVAKSFSSDEFPVDETFVQNFSPPKDDETENEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVALRSPEAIEAFKMLNPRYRKKKMEEMGLTEEEYYQKQFEIKGEIPEPLVTKWAGPLVVRLVPPRDWPPRGWEVDRKELAYIREAHKWQARRVSLEEVENGVRTETDDVCLDRYKVFLKQYNEWVKANKDRLEEESYKQDQDYHPGRRKRGKDYKEGMYELPFYYPGQICVGKVVTLHLYQGAFVDIGGVYDGWVPIKNNDWFWIRHHIKVGMHVIVEITAKRDPYRFRFPIELRFVDPNIDHLIFNKFDFPPIFERDEDTNPDELRRDCGRPPIPRKDPGDKPEEESLLSNHPYVDKLWQINVAEQIILNDMEINPDKYKGKKLSDLVDEEDFDEQNAVEYTKVRYKNALVPKITMVSTILIVIFREELIIPLIHVKSYKCRV. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02880 495 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 46 466 IPR044967 GO:0000427|GO:0003723
Seca4g02880 495 SUPERFAMILY Nucleic acid-binding proteins 274 333 IPR012340 -
Seca4g02880 495 ProSiteProfiles S1 domain profile. 278 346 IPR003029 GO:0003676
Seca4g02880 495 MobiDBLite consensus disorder prediction 368 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02880 Seca-Chr4 49721213 49730746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02880 - - gmx:100783002 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02880 4 49721213 49730746 Seca4g02880 4 49721213 49730746 ECH