Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02873 ATGGCGAAGCAAGATAGCTACGACGTCGTTTCCGATCTGGTCGACTTCCTCAACGCTTCTCCAACTGCTTTCCACGCCGTCGATGAGGCGAAGAAGCGGTTGAAAAGCGCTGGCTACCAGCAGCTCTCGGAGAAGGAAGTTTGGGAGCTGAAAGCCGGCAACAAGTACTTCTTCACCAGGAACCACTCCACCGTCGTCGCCTTCGCCATCGGCAAAAAATACGTTCCCGGAAATGGATTCCACATAATTGGGGCTCACACTGATAGTCCTTGTCTGAAACTGAAGCCGGTGTCCAAGGTGGTTAAGGGTGGAATTTTGGAGGTTGGTGTTCAACTCTATGGAGGTGGTTTGTGGCATACGTGGTTCGATCGGGACTTGACTGTGGCAGGGAGGGTTCTGATACGAAACGGGAATGCAGGTTCTGTTTCGTACTCGCATCGCCTTGTTAGAATTGAGGAACCTATAATGCGGATCCCCACTTTGGCAATTCACTTAGACAGGACTGTTAATGATGGATTCAAATTTAATACGCAGACTCATCTTATTCCCATCCTGGCAACATCGCTAAAGGTAATCATACAAGCAGAGGTTAATAAAGTGTCCTCTGAAAGTGGTTCGGTTGAAAGTGGAAAGCATAGTGATGGAAAGAATGAAAAGGATAAAACAAGTGCTAGCACTACGAAGCACCACCTTCTTCTTCTACAGTTGCTTGCAAGTAAGCTTGGGTGTGAACCAGATGACATTTGTGATTTTGAATTGCAAGCTTGCGACACACAACCAAGTGTAGTGGCTGGAGCTGCAAAGGAGTTCATATTTTCAGGACGGCTTGATAACCTCTGCATGTCATTTTGCTCATTGAAGGCATTGATAGATGCTACATCCTCTGAAAGCAGTCTTGAGGAAGAGACTGGTGTTAGAATGGTGGCTTTGTTTGACCATGAGGAATGTGGATCTGATTCTGCACAAGGAGCTGGCTCTCCTGTCATGCTAAATGCTTTGTCTAGGGTTACAAATTCCTTCAGCTCAAACTCCAATGTTCTTGAGAAAGCACTACAAAGAAGCTTCCTTGTATCTGCCGATATGGCACATGCACTACATCCCAATTACATGGAGAAGCATGAAGAAAACCATCAGCCTAAACTACATGGAGGACTTGTCATTAAGCAGAACGCAAATCAACGCTATGCAACCAATGCTATCACATCCTTCACATTCAGGGAGATAGCATCGAGACATAACCTTCCCGTTCAGGACTTTGTTGTGCGCAATGACATGTCTTGTGGTTCAACCATCGGTCCAATCCTTGCGAGTGGCGTAGGTATTCGCACTGTTGATGTCGGTGCCCCACAATTGTCAATGCATAGCATACGAGAAATGTGTGCTGTTGATGATGTGAAGTATTCATATGAGCATTTCAAGGCCTTTTTCCAAGAATTCTCTCATGTCGATGCAAAGATTACCGTGGACATATAG 1473 0.4582 MAKQDSYDVVSDLVDFLNASPTAFHAVDEAKKRLKSAGYQQLSEKEVWELKAGNKYFFTRNHSTVVAFAIGKKYVPGNGFHIIGAHTDSPCLKLKPVSKVVKGGILEVGVQLYGGGLWHTWFDRDLTVAGRVLIRNGNAGSVSYSHRLVRIEEPIMRIPTLAIHLDRTVNDGFKFNTQTHLIPILATSLKVIIQAEVNKVSSESGSVESGKHSDGKNEKDKTSASTTKHHLLLLQLLASKLGCEPDDICDFELQACDTQPSVVAGAAKEFIFSGRLDNLCMSFCSLKALIDATSSESSLEEETGVRMVALFDHEECGSDSAQGAGSPVMLNALSRVTNSFSSNSNVLEKALQRSFLVSADMAHALHPNYMEKHEENHQPKLHGGLVIKQNANQRYATNAITSFTFREIASRHNLPVQDFVVRNDMSCGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCAVDDVKYSYEHFKAFFQEFSHVDAKITVDI. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02873 490 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 152 169 IPR001948 GO:0004177|GO:0006508|GO:0008270
Seca4g02873 490 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 443 458 IPR001948 GO:0004177|GO:0006508|GO:0008270
Seca4g02873 490 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 80 96 IPR001948 GO:0004177|GO:0006508|GO:0008270
Seca4g02873 490 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 113 133 IPR001948 GO:0004177|GO:0006508|GO:0008270
Seca4g02873 490 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 354 370 IPR001948 GO:0004177|GO:0006508|GO:0008270
Seca4g02873 490 Gene3D Zn peptidases 13 475 - -
Seca4g02873 490 MobiDBLite consensus disorder prediction 203 223 - -
Seca4g02873 490 FunFam Aspartyl aminopeptidase 1 91 260 - -
Seca4g02873 490 SUPERFAMILY Zn-dependent exopeptidases 4 477 - -
Seca4g02873 490 Gene3D Aminopeptidase i, Domain 2 90 259 IPR023358 GO:0004177
Seca4g02873 490 Pfam Aminopeptidase I zinc metalloprotease (M18) 16 476 IPR001948 GO:0004177|GO:0006508|GO:0008270
Seca4g02873 490 SUPERFAMILY Aminopeptidase/glucanase lid domain 92 254 - -
Seca4g02873 490 MobiDBLite consensus disorder prediction 209 223 - -
Seca4g02873 490 CDD M18_DAP 12 477 - -
Seca4g02873 490 PANTHER ASPARTYL AMINOPEPTIDASE 3 489 IPR001948 GO:0004177|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02873 Seca-Chr4 49643580 49652503 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02873 K01267 - gmx:100781379 830.476