Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02861 ATGAATAATCACGCAAAGAATGTTGCTGTACCATCCTTGTTTGGTCATTCTGGAGCAACTCCACAGCCCCAACACTCCAACCCCTTGAGCCAGCAATGGAACCACACAACCAATCTTTTTTCTCGGTCACACCCTCAAACACACTTTCCTGGTCACTTTCAGCTTTCAGAAACCCAATCACAGGTGCTTGCACAAGCTCAGTATGCACGGGCACAATTGCTGTCTCAGGCTACACATGCTCATATACAATCTCAAACTCAGCCTGTTGTTCACTTGCATAGTGCCAATACCAATGCTTCTAATGTTTCATCAACTCCAACCACTGGAAGTGCCAAGCGAACAACCCAAAAGCACCCTTCACGGCCTTCCAGTTCATCAAATACAAACCAATCTTCCTTGCCAGATAAGACCATGGACTTGACCCTGGCTGCTCAGCAAAAGAAAAGGGAGTTCCCAGAGAAGGTGGCTCCAATTCTGCCTGAGTCTGCTCTTTATACTCAGTTGCTTGATTTTGAGGCTCAGGTTGATGCTGCTTTCGCTAGGAGAATGATTGATATACAGGAGGCTATTAGATGCCCTCCTCATGTTCAGAAAACTCTTCGTATTTATGTGTTTAATACCTTCTCGAATCGCACAAAAATTGATTCTGAGAAGAAAAATGTTGAGGAATCTTCTTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTCAGGATCCCGTGTTTGGAATTTTGCAGAGATCAAGTCCTTCTTACCCAAAGTTCTCTGCTTTCTTCAGGAAAATTACCATATTCCTGGATCAGAGCCTTTATCCTGATAATCATGTCATTGTATGGGACAGTGCTCGATCACCTAACCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAGACAGAGAATTCACTGCAATGATCAGAATAGAAATGAATTATTCACCTGAGAAGTTTATGGTCTCAACACAATTGTCTAATCTTTTGGGGGTTGAGGTTGAGACTTGCCCGAGAATAATAGCTGCTCTTTGGCACTATGTGAAGTCTAGGAAGCTACAGTGCCCAGATGACCCTTCATTTTTCATGTGTGATCCTTCTCTCCAAAGGGTGTTTGGGGAAGAGAAGATGAAATTCACCATGGCTGCTCAGAACTTGTTACAGCATTTATCACAACCACAGCCTATACATTTGGAGCATAATATCAAGCTCTCTGGATTTAGTCCAGCTGAAACTTCATGTTACGATGTACAGGTTGATGTGCCGGTTCCACTGGAGAAGGAAATGTCTACATTATTGGCTAGCAATAGCATTGAGAGTCACAAAGAGATTGAAGCTTATGATGAGGCGATTTGCACTTCCTTAAAGAAGATCCAGGAGCATCATAGAAGACGGGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGTAGAATTTATTGATACTTTGACTGCTTCTCAGAGCAAGGATCTAAAACATGTTACTGGAGATACCAACCAAAGTGCTGGAAAGGAACTGCTTTCTGAATTCTACAATCAACCATGGTAA 1536 0.4277 MNNHAKNVAVPSLFGHSGATPQPQHSNPLSQQWNHTTNLFSRSHPQTHFPGHFQLSETQSQVLAQAQYARAQLLSQATHAHIQSQTQPVVHLHSANTNASNVSSTPTTGSAKRTTQKHPSRPSSSSNTNQSSLPDKTMDLTLAAQQKKREFPEKVAPILPESALYTQLLDFEAQVDAAFARRMIDIQEAIRCPPHVQKTLRIYVFNTFSNRTKIDSEKKNVEESSWSLKITGRILEDGQDPVFGILQRSSPSYPKFSAFFRKITIFLDQSLYPDNHVIVWDSARSPNQQDGFEVKRKGDREFTAMIRIEMNYSPEKFMVSTQLSNLLGVEVETCPRIIAALWHYVKSRKLQCPDDPSFFMCDPSLQRVFGEEKMKFTMAAQNLLQHLSQPQPIHLEHNIKLSGFSPAETSCYDVQVDVPVPLEKEMSTLLASNSIESHKEIEAYDEAICTSLKKIQEHHRRRAFFLSFSQSPVEFIDTLTASQSKDLKHVTGDTNQSAGKELLSEFYNQPW. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02861 511 SUPERFAMILY SWIB/MDM2 domain 307 397 IPR036885 -
Seca4g02861 511 ProSiteProfiles SWIB/MDM2 domain profile. 312 389 IPR003121 -
Seca4g02861 511 SMART swib_2 313 392 IPR019835 -
Seca4g02861 511 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 129 488 - -
Seca4g02861 511 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g02861 511 MobiDBLite consensus disorder prediction 17 32 - -
Seca4g02861 511 Gene3D SWIB/MDM2 domain 309 394 IPR036885 -
Seca4g02861 511 Pfam SWIB/MDM2 domain 316 387 IPR003121 -
Seca4g02861 511 CDD SWIB_like 319 387 - -
Seca4g02861 511 MobiDBLite consensus disorder prediction 97 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02861 Seca-Chr4 49380596 49382131 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca4g02861 SWIB 6.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02861 K11650 - gmx:100784907 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02861 4 49380596 49382131 Seca4g02861 4 49380596 49382131 ECH
Seca4g02861 4 49380596 49382131 Seca4g02861 4 49380596 49382131 PCT