LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g02814	ATGGCTACATCGGAATCCTCCGGCGATCACATCGTGTCTCCTCCGCTCGTCGACCTTCGCCTCCTCTCACAATCCGAACTATACACTCTTTCCCTCTCCGCCTCCACTGGCCTCCATCGTCGCAGTGACGATGATTCCGTTATCCCTAAAATCGACCGTTCCGTTTTCAACGAGTCCGCTGGAAGCCGCAAACAGACGTTTTCTCGTCTCCGTCTTGCCCCTCGCAACAAACAAAACGCCTCCGCTCCCGCCTCCTCCTCCTCCCTCCACATTCCCCTCCACATTCCCGAGCCTGTCGACGAAGAAAACTCACAAATAATCACTCTTCTCCAAGAACTCTTTGGAGTGGAGTCCCTTCGCGGTGCCGGCGATGAGCGCCTCGTTCCTGTCCAAGTCGAATTCAAACAACCTTTCCCGGAATCCGCGGCTGGCGCCTTCCAGAACATTCCGATTGACGTTGTTGACAGCGGTCAGAGGAAGCGGAAGCGTGGGCGGTCGCGCAAGAATGATGACGGCGAGGGCGAGGGCGAGCGGGAGGTGAAGGCGGTGGCGGTGGTTAATGAGAAGAAGGGTTTTGTGGTGGACGCGGATGGAATGGCGGATGTTGGGGATCCGTTTGCGGAGGAATTGATAGGGAGGACCCAAGGGATGGAGACGGAGTCGCAGTTGTTGGAATTCTTGGAGGGTTTGAATGGAGAATGGGGGAGTCAGAGAAAGAAGAGGAGGATTGTGGAGGCCAGTGATCTCTGTGACTTGTTGCCTGCTGGATGGAAGATCGTGCTTAATCTTCAGAGGAGAGCAGGTCGCGCATCCGTAATTTGTCGCCGTTACGTAAGCCCTGAAGGACACCAGTTTGAATCATACAAGGAAGTCTCTGCACACTTGCTTTCTTTTCGTGGAGTTCAAGATATAAGACATTCAAACTCTAGTTATACTGATGGTAGTCAGCAGTTTTCCTGTAACGTCAATATGGCATCTGAAAGTCAGATTGTTGGTCATGTCTCTACAGGAGAAATAAAGACTGATGCCAATGTAAGTTCCTCTCTTCACGAGAAGCAGGCCAGCATACCATCATTGATTGGAACTGAGAAATTAAACACTTCTGATGGGAATTTTAATAGTGATCTGGCTTTGGGTTCTAAATTAGGAGATACTACTAGTGGAGCCGTTAGAGACTCTGACCATCAAACTGACAATAAGCAACCATTGAAGGATGATAACAATGATGCAAATTCAGTTCAGGGATGTTCTCCTGCAGAGGATAGAGTTCATAATGTACGTAATGAGAAGTTGGCTGGTGCTATTGAGGCTAGTGATGCTTCATGCAATCTTTATATTCCATTGGTCTTCACATCTCCTTTCTCCAATACTGGTAGTGGTATTGATCAATTTTCTGATGAAATAAATGCTGTCACATGCATGAAAAGTGGCATTGCTAATTTTGATAGTCAGGATAGAAATACTGGATGCTATGAAACTGTTCCTTGTGGAAATGAGCAAGTACACGTTGACAATTCAGAGGATAGGCATCTTAGCTCACTGGTGGACATGGAGATTACTGATGGAAAGGCTGTTAAGGATGACAAACAACAACTTGTGTCTAGTAGAGATCAGTCTGAAATTAAAGATTTTTCTACTAATGTTAAACTGCAGTATAGTTCTGATGGCTGTTCACTTGTCCCATCTCAGAATGAACTTAAGCAATCTATGAATGGTATGGACAGGGCACTGACTTCCATGCTGAAGGACACGGCTGAGGGGAATTATTTTGATGATTTACCTAGCTCATTTCTTGATGAGAGAACATGTATTCACAATGGTTACAGTGATTTTACTCCTAATCTTGAAGTACCTAAGGATGTTAGTGATAATCATGTTCCTCCAAATGAGGAAGTTGTGGCAAGCTACTTACAGAAAAGGAGTTCCTCAAATGATCAAATTTGCACAATGGACCATCTGTTGGACAGTTCTGAAAGTAACCTATTTACTCTAACTGGTAATCAGCACCTGTCTACATATCATGATAATATGAATAATTTCTCTGCTGGAACCTTTGATGCTCTCAAAGCTGTTGATGGTGGTTGCCTGAAGCCTCAGTTAGGCATTGTTTCTTGCAGCAATGTTGTTGCAGTAGATGCATATACATCTGCAAGAGTTATGCAGGAAAAATCACAAGGATGTGTATCCGTTCCTCTTGGTGGAAGTATATTAAACCAATTTGACAGTGATGGTGCTGTTAATAAAGCACATAAGTCTTGCTTATCAGAGAAGGCTAAGAGTGAAGTTGAAATGTTCCAAACTGACTCTATGGAGTTCCCTGGTAACCATAAGGCTCTGCTTGTATATTCTCAATTTCCTAGCGAGGATGATAGCCTAGAAAAGCTAATGATTTCCCCAGGTTTCTGGTTTACAGATTTTGCTTTTATTTTGGGACAAAACAGACAATTGCTTGAAGGCAGCATTATTTTATTGATAGATTCGGCTGGTTGTGCTGGTGGCTTCTCTATTCCAGAGGTTATTTTGCAGTTCTGGTGTGATGCTTCACCTACTTCTTGCCAGAGCTCAGATGCCATTTTTATTTTGCAAGGAAAAGTTTTCCTTTAG	2604	0.4455	MATSESSGDHIVSPPLVDLRLLSQSELYTLSLSASTGLHRRSDDDSVIPKIDRSVFNESAGSRKQTFSRLRLAPRNKQNASAPASSSSLHIPLHIPEPVDEENSQIITLLQELFGVESLRGAGDERLVPVQVEFKQPFPESAAGAFQNIPIDVVDSGQRKRKRGRSRKNDDGEGEGEREVKAVAVVNEKKGFVVDADGMADVGDPFAEELIGRTQGMETESQLLEFLEGLNGEWGSQRKKRRIVEASDLCDLLPAGWKIVLNLQRRAGRASVICRRYVSPEGHQFESYKEVSAHLLSFRGVQDIRHSNSSYTDGSQQFSCNVNMASESQIVGHVSTGEIKTDANVSSSLHEKQASIPSLIGTEKLNTSDGNFNSDLALGSKLGDTTSGAVRDSDHQTDNKQPLKDDNNDANSVQGCSPAEDRVHNVRNEKLAGAIEASDASCNLYIPLVFTSPFSNTGSGIDQFSDEINAVTCMKSGIANFDSQDRNTGCYETVPCGNEQVHVDNSEDRHLSSLVDMEITDGKAVKDDKQQLVSSRDQSEIKDFSTNVKLQYSSDGCSLVPSQNELKQSMNGMDRALTSMLKDTAEGNYFDDLPSSFLDERTCIHNGYSDFTPNLEVPKDVSDNHVPPNEEVVASYLQKRSSSNDQICTMDHLLDSSESNLFTLTGNQHLSTYHDNMNNFSAGTFDALKAVDGGCLKPQLGIVSCSNVVAVDAYTSARVMQEKSQGCVSVPLGGSILNQFDSDGAVNKAHKSCLSEKAKSEVEMFQTDSMEFPGNHKALLVYSQFPSEDDSLEKLMISPGFWFTDFAFILGQNRQLLEGSIILLIDSAGCAGGFSIPEVILQFWCDASPTSCQSSDAIFILQGKVFL.	868

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g02814	867	ProSiteProfiles	Methyl-CpG-binding domain (MBD) profile.	243	316	IPR001739	GO:0003677
	Seca4g02814	867	SUPERFAMILY	DNA-binding domain	245	304	IPR016177	GO:0003677
	Seca4g02814	867	MobiDBLite	consensus disorder prediction	154	179	-	-
	Seca4g02814	867	MobiDBLite	consensus disorder prediction	383	418	-	-
	Seca4g02814	867	Gene3D	-	232	343	-	-
	Seca4g02814	867	MobiDBLite	consensus disorder prediction	391	405	-	-
	Seca4g02814	867	PANTHER	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	5	356	IPR037472	-
	Seca4g02814	867	MobiDBLite	consensus disorder prediction	72	88	-	-
	Seca4g02814	867	MobiDBLite	consensus disorder prediction	72	91	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g02814	Seca-Chr4	48642384	48653753	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g02814	-		-	gmx:102665295	847.425

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g02814	4	48642384	48653753	Seca4g02814	4	48642384	48653753	ECH