Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02794 ATGGCCACAGGCATAGCAGTTACCGGTATGTACATGCGCACCCCAACACTCTCTTCTTTCAACCACACCACGCGCCTCTTCTCGCCAACTGCTTTCGCTGCTAAGTTTCGATTTCGACTTCGAGCTGCTTCTTCTTCCTCTTCTTCTACGGTTCTCCTTGACACCGCCACCAACCAAACGGATTCCGTTCTAGTTGAGAAAGAAGTCAGCCGTGGAAGTAACTTATTGGCTTGTCCCGTATGTTATGAGTCCTTGACATGGACCGGTGATCCTGGCTTGTCTGTGGTGCCATTTGTATCATTTCTTTATGAGAGGGGCTGGCGTCAAACCTTTTCTGTATGGGGTGGTTTTCCAGGTCCTGAGAAAGAGTTTGAACTGATGAAGGGTTTCCTCAAGCCAGTATTGGGTGGAAATATCATTGACGCTAGTTGTGCAAGTGGATTATTTTCAAGATTATTTGCAAAAAGTGGACTGTTTTCTTCTGTTGTTGCTCTAGACTACTCAGAAAACATGTTGAGGCAATGTTATGAGTTCATTCAGCAGGAAGATAACTTTCCAAAAGAGAACTTCATCTTGGTTAGAGCAGACATAGCTAGACTTCCTTTTGTTTCAAGTTCTGTTGATGCTGTGCATGCAGGCGCAGCTCTTCACTGCTGGCCTTCCCCATCAGCAGCTGTAGCTGAAATAAGCCGTGTTTTACGACCTGGAGCTGCCTCTTCAGTTCTTCTTCACCCAAATATCCTGCGACCACTTCGTTCTTCTTCTCCGACCAGATCTGTTGGCGCCGCCGCCTCCGCTGGTTCAGGCTCTGTTTCTCTTTTCCGCGCGATTCAGGCTCTGTTTCTCTTCTCCGCGCGGTTCAGACTCTGTTTCTCCGTGCGTTCTGCACGTTGCTACGGCCCCCAAGCTGCTGCTTCTCTTCTGCGCACATTTTGCTCTCTGCAGCAGCCCCTAAGGTACTTCTTTTTCTCTTCTGCACACGTTTTGCTCTCTGCAGCAGCCCCTAAGCTTCTCCTGCTCAAGCATAGGCTGCACAAAAAAGCCACAATGTCAGGGGAGGGAGAATCAAACACCCAGTCAAACACCCAGCCATTAACAGGAACCTCCTCCAATTCCATTCATTCTAAGAGGACTGATGGTACTTGGAAGCACTGTACACCAGTGAGAGAGAATGATACAAATGAGATTTTTTGTAATTATTGCCGGAAGGTTATGAAAGGAGGTATTACAAGGGGGAAACAACATTTGATTGGAAAGGCGGGCAATGTTACGGCTTGTTTGCTGGCTCCAGAAGCTGTCAAGGTTGAGATAAGGTCAGCTATAGATGGTAAGAAGCTGAAGCAGAATGAAGCATTTAAGAAGGCAATACAAGACATTGAAGCTTTGAATGAAGAAGGATGTATGGAAATTGGAAGTTCTGGTGATTTCAGTTTGAAGGATACTAGGAAGGGACCTATGGACCTTTACACTCAACCTCAATCTACAGCTGCAAAAAATAGGAAAGCCAAGGTGGTGCAAGCGGGCATAAGAGAGCTTTGTGATAAAAAAGCTACAGAAAGGGTGTACCAATCTATAGCCCGGTTTTGGTACCAAGCCGGCATACCTTTCAACTTAATAAAGTTAGAAAGTTTTCATGACATGCTTCGTGATGTTGGACATTTTGGGAAGCAACTGAAACCTCCTTCCTACCATGACATTAGAGTACCACTCCTTCAAAAAGAGGTGAAGTACACTAATGAATTAATGAAGCCATTAAAGGATCAGTGGGCAAGTTTTGGGTGTTCCCTAATGTCAGATGGTTGGACTGATAGGAAACAAAGAAGCATAATCAACTTTTTGGTGAACTCCTCTTCTGGGACAATGTTCTTAAAGTCGGCTGATGCATCTGACTATGTAAAGACCGGTGAGAAGATATTTGAGTTGCTGGATTCTGTTGTGGAGGAGATTGGAGAGGAAAAGGTTGTCCAAGTTATAACGGACAACGGAAGTAACTTTGTTCTTGCTGGTAGGTTGCTAGAGGAAAAAAGACCAAAAATTTATTGGACCCCTTGTGTTGCACATTGTATAGACTTGATGCTAGAAGACATTGGTAAGATGCCCAATATAAAGAAGACCATTCAGCGAGCTATCTCTCTTGTTGGCTTCATTTATAACCATTCAAGCACTTTGAGCATGTTGAGGTTCTTTACCGGTGGGAGGGAGTTAGTGAGGCATGCAATCACTCGATTTGCAACATCTTATCTTTCCTTGGAGAGGATTCATCAAGAGAAAACTAATCTTCGAAAGATGTTTGTGTCAGAAGAGTGGAATGAAAACAAGCTATCAAAGGAGGCCAAGGGTAAGGAAGCCACTAAAACTGTCTTGATGCCTAGTTTCTGGAAGAATGTAGTATTCATTTTGAAAGTGATGGCTCCTCTTGTGAAAGTGCTTAGGCTTGTGGATAGTGAGAAAAAACCAGCCATGGGCTACATATATGAGGCAATGGACAAGGCGAAGGAAACCATTATGAAATCTTTTAAAAATGAAAGCAAATACAAGGATGTATTTGCAATTATTGATAAAAGATGGGATATTCAGCTTCATCGCCCTTTACATGCTGCTGGTCACTTTTTGAACCCGGAGTTCTTTTATGCCAACCCACAGATGGAGTTTAATGGTGAGATTATTAGGGGTTTGTATGATTGTATCAATAAATTGTTGGGAGATTTGGAGATGGAGAAGATTGTTCATAAGGAGTTGGCTCAGTACAAAGCTGCGAGTGGTATGTTTGGGTCCACAACTGCTAAGGCAATGAGGGATGAAGTTGCACCGGCTCAATGGTGGCGGATGTATGGTTCAGATACTCCCTATTTGCAACAACTTGCAATAAGGATCCTTAGCTTGACATGTAGTGCTTCGGGTTGTGAACGTAATTGGAGCGTCTTTGAGCAAGTTCATGCTAAGAAAAGGAATAGACTCGAGCATAAAAGACTACATGACTTGGTATTTGTCAAGTATAATCAAACACTTCATCGAAGGTATAACCTTAAGGATGAAATTGATCCAATTAGTCTCGATGGGATTGATGATTGCAATGAGTGGCTAATTGGAGAGATGGATGGGGATGAGGAAGAAGGTGAAGATGAGAGGGTTCATGAAGGAGGTGATGACCTTACTTGGAGAACAGTTTATCAAGCTTCGGGACTTGATGAGCCTAGACAATACACTAGGCGTCACAAAAGGAAACAAGTTGGAAGTGGAGAGGGGCAAGTAGGAACATCTACTAATCTTTCTAAAAGAGCCAAAGGAGTAGCTGCAAAGAACAAGGGGAAAAGGTTTGGAGTTGTTGAAGAAGCTGAGGCATCAGAAGATTCTAGCAGTGAGGAGGATGAATTAGTGCCAAATGCTGATTTCATACATTCAGATGGAGAAGAAGCTGAAGGATTTTTAAATGAGCAGAATCACCATGTGGAAATTAATTATGCAGACATTGATGATGAAGAGGAGGATTAA 3492 0.4336 MATGIAVTGMYMRTPTLSSFNHTTRLFSPTAFAAKFRFRLRAASSSSSSTVLLDTATNQTDSVLVEKEVSRGSNLLACPVCYESLTWTGDPGLSVVPFVSFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKPVLGGNIIDASCASGLFSRLFAKSGLFSSVVALDYSENMLRQCYEFIQQEDNFPKENFILVRADIARLPFVSSSVDAVHAGAALHCWPSPSAAVAEISRVLRPGAASSVLLHPNILRPLRSSSPTRSVGAAASAGSGSVSLFRAIQALFLFSARFRLCFSVRSARCYGPQAAASLLRTFCSLQQPLRYFFFSSAHVLLSAAAPKLLLLKHRLHKKATMSGEGESNTQSNTQPLTGTSSNSIHSKRTDGTWKHCTPVRENDTNEIFCNYCRKVMKGGITRGKQHLIGKAGNVTACLLAPEAVKVEIRSAIDGKKLKQNEAFKKAIQDIEALNEEGCMEIGSSGDFSLKDTRKGPMDLYTQPQSTAAKNRKAKVVQAGIRELCDKKATERVYQSIARFWYQAGIPFNLIKLESFHDMLRDVGHFGKQLKPPSYHDIRVPLLQKEVKYTNELMKPLKDQWASFGCSLMSDGWTDRKQRSIINFLVNSSSGTMFLKSADASDYVKTGEKIFELLDSVVEEIGEEKVVQVITDNGSNFVLAGRLLEEKRPKIYWTPCVAHCIDLMLEDIGKMPNIKKTIQRAISLVGFIYNHSSTLSMLRFFTGGRELVRHAITRFATSYLSLERIHQEKTNLRKMFVSEEWNENKLSKEAKGKEATKTVLMPSFWKNVVFILKVMAPLVKVLRLVDSEKKPAMGYIYEAMDKAKETIMKSFKNESKYKDVFAIIDKRWDIQLHRPLHAAGHFLNPEFFYANPQMEFNGEIIRGLYDCINKLLGDLEMEKIVHKELAQYKAASGMFGSTTAKAMRDEVAPAQWWRMYGSDTPYLQQLAIRILSLTCSASGCERNWSVFEQVHAKKRNRLEHKRLHDLVFVKYNQTLHRRYNLKDEIDPISLDGIDDCNEWLIGEMDGDEEEGEDERVHEGGDDLTWRTVYQASGLDEPRQYTRRHKRKQVGSGEGQVGTSTNLSKRAKGVAAKNKGKRFGVVEEAEASEDSSSEEDELVPNADFIHSDGEEAEGFLNEQNHHVEINYADIDDEEED. 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02794 1163 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 107 237 IPR029063 -
Seca4g02794 1163 Pfam hAT family C-terminal dimerisation region 928 1000 IPR008906 GO:0046983
Seca4g02794 1163 ProSiteProfiles Zinc finger BED-type profile. 376 433 IPR003656 GO:0003677
Seca4g02794 1163 CDD AdoMet_MTases 138 237 - -
Seca4g02794 1163 MobiDBLite consensus disorder prediction 1080 1094 - -
Seca4g02794 1163 Pfam Protein of unknown function (DUF 659) 561 709 IPR007021 -
Seca4g02794 1163 Coils Coil 445 465 - -
Seca4g02794 1163 MobiDBLite consensus disorder prediction 351 376 - -
Seca4g02794 1163 SUPERFAMILY Ribonuclease H-like 591 1004 IPR012337 -
Seca4g02794 1163 PANTHER OSJNBA0013A04.12 PROTEIN 394 1004 - -
Seca4g02794 1163 MobiDBLite consensus disorder prediction 349 385 - -
Seca4g02794 1163 MobiDBLite consensus disorder prediction 1126 1155 - -
Seca4g02794 1163 Gene3D Vaccinia Virus protein VP39 94 258 IPR029063 -
Seca4g02794 1163 MobiDBLite consensus disorder prediction 1108 1163 - -
Seca4g02794 1163 MobiDBLite consensus disorder prediction 1064 1096 - -
Seca4g02794 1163 Pfam Methyltransferase domain 141 237 IPR013216 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02794 Seca-Chr4 48221410 48228096 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02794 - - gmx:102661783 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02794 4 48221410 48228096 Seca4g02794 4 48221410 48228096 ECH