Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02777 ATGTTATTAATACGTTTCTTGTCTGTGCAGCTGAGGAATTTGTTGTGGGCAACATCAAAGCATGATGTATACCTTATGCAAAACTACTCAGTGATGCATTGGTCCTCAGTACTACAAAGGGGCAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCATAAGCGTCCTGGATTTTTAGCTCAACCTGTCTCTAGAGTGCAAATAAGCACCATGGCTGTTAAGGAAAATCTGATGGTGGCGGGTGGTTTCCATGGTGAGCTTATTTGCAAGAATTTGAATCATTCTGGAGTTGCATTCTGCTGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGATGTTTACCGCAATCCAACTGGGTCGTTGAGGGTCATCACAGCAAATAATGATTCCCAAGTTCGGGTTTTTGACACACAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTCAATAATACTTCTGTTAGTCCGGATGGAAAGTTGCTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATAGCTGATGCTAACACCGGGAAGGTTACTGGGAGCCTAAAAGGGCACTTGGACTATTCCTTTGCGTCAGCTTGGCACCCAGATGGACGAATATTGGCTACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAGTCCATAGCGGTGCTAAAGGGAAGAATGGGTGCAATAAGAGCCTTAAGATTCACATCTGATGGACGGTTTTTGGCCATGGCTGAGCCAGCAGACTTCGTGCATATTTTTGACTCGCATTCTGGCTATGTACAAGGTCAAGAGATAGATCTATTTGGTGAGATTGCTGGGTTATCCTTTAGCCCGGACACAGAGGCTCTGTTTGTTGGTATTGCTGACCGAACCTACGGTAGCTTATTAGAGTTCACCAGAAAACGTCATAATAATTATCTAGACACCATGTTTTAA 975 0.4318 MLLIRFLSVQLRNLLWATSKHDVYLMQNYSVMHWSSVLQRGKEVLNVAKPIIPTHKRPGFLAQPVSRVQISTMAVKENLMVAGGFHGELICKNLNHSGVAFCCKITTDDNAITNAVDVYRNPTGSLRVITANNDSQVRVFDTQNFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKVTGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSIAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYVQGQEIDLFGEIAGLSFSPDTEALFVGIADRTYGSLLEFTRKRHNNYLDTMF. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02777 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 227 - -
Seca4g02777 324 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 321 - -
Seca4g02777 324 SMART WD40_4 228 267 IPR001680 GO:0005515
Seca4g02777 324 SMART WD40_4 185 224 IPR001680 GO:0005515
Seca4g02777 324 SMART WD40_4 144 182 IPR001680 GO:0005515
Seca4g02777 324 SMART WD40_4 86 141 IPR001680 GO:0005515
Seca4g02777 324 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Seca4g02777 324 SUPERFAMILY WD40 repeat-like 64 304 IPR036322 GO:0005515
Seca4g02777 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Seca4g02777 324 FunFam WD-40 repeat family protein 105 321 - -
Seca4g02777 324 Gene3D - 93 320 IPR015943 GO:0005515
Seca4g02777 324 Pfam WD domain, G-beta repeat 187 224 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02777 Seca-Chr4 47893331 47899026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02777 128 304 Miscellaneous Gene Families AT5G08390 26.966 1.15e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02777 - - gmx:100775453 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02777 4 47893331 47899026 Seca4g02777 4 47893331 47899026 ECH