Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02765 ATGGCTGCGTTCCGTATTATGTTTCGTCACATTCGCATAAACTGCCTCTTCACTCCGCCACCTTCATCACCCATGGGCTTGCTTCTCAATCGTCGTGCCACGTGGCACTCCAAAAGTATGAAAACTCGTGCATGTTCAGAAAATAACGGTTACAGGATGGTGGTGAAGAAAGACGAGCGGTTAGGGGATAATGATGAGGTTGTTGGAAATTCAACGACTATCGCGGCCATTGTAACATCTTTGGGGGGCCCCTCTGCTGCCGTCGGAATCGTTCGACTTTCGGGTCCTCACGCGGTGTCTATTGCGGGTCGAGTGTTTCGACCCGCCAAGAGGAACACGTGGCAGCCCACCAGTCATGTTGTAGAATACGGCGTCGTGTTCGATTCCCATGGGAACGTCATCGATGAGGTTTTGGCAGTGCCAATGCTAGCCCCGAGGTCGTACACTCGCGAAGATGTGGTTGAGCTTCAATGTCACGGGAGTGAAGTGTGTCTGCGCCGCGTGCTTAGAACTTGTTTGGAAGCTGGAGCAAAACTTGCTCAGCCAGGCGAGTTTACTCTTCGTGCCTTTCTAAATGGTCGTTTGGATCTCTCACAAGCTGAAAGTGTTGCAAGACTGATCACAGCCAAATCTGTCGCTGCTGCAGATGCTGCACTGGCAGGAATCCAGGGTGGTTTTTCTTCTCTTGTCAGATCATTGAGAATTCAGTGCATTGATTTGCTCACTGAGATTGAAGCACGTTTAGATTTTGATGATGAGATGCCACCTTTGGATTTGAATGGGGTTATGGATAGAATACATAACATGTCACAAGATGTTCAGAATGCATTGGAAACAGCAAATTATGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGGCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCGTGGAGCAAACATGCAGAGTGA 945 0.4847 MAAFRIMFRHIRINCLFTPPPSSPMGLLLNRRATWHSKSMKTRACSENNGYRMVVKKDERLGDNDEVVGNSTTIAAIVTSLGGPSAAVGIVRLSGPHAVSIAGRVFRPAKRNTWQPTSHVVEYGVVFDSHGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGAKLAQPGEFTLRAFLNGRLDLSQAESVARLITAKSVAAADAALAGIQGGFSSLVRSLRIQCIDLLTEIEARLDFDDEMPPLDLNGVMDRIHNMSQDVQNALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKHAE. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02765 314 Pfam GTP-binding protein TrmE N-terminus 73 194 IPR018948 -
Seca4g02765 314 FunFam tRNA modification GTPase MnmE 68 194 - -
Seca4g02765 314 CDD TrmE_N 73 193 IPR018948 -
Seca4g02765 314 Pfam 50S ribosome-binding GTPase 291 311 IPR006073 GO:0005525
Seca4g02765 314 Pfam MnmE helical domain 197 290 IPR025867 -
Seca4g02765 314 Gene3D Probable tRNA modification gtpase trme; domain 1 61 194 IPR027266 GO:0005515
Seca4g02765 314 SUPERFAMILY Folate-binding domain 72 194 - -
Seca4g02765 314 PANTHER TRNA MODIFICATION GTPASE GTPBP3 53 312 - -
Seca4g02765 314 Gene3D tRNA modification GTPase MnmE domain 2 195 314 IPR027368 -
Seca4g02765 314 SUPERFAMILY TrmE connector domain 195 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02765 Seca-Chr4 47655995 47659664 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02765 K03650 - gmx:100779193 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02765 4 47655995 47659664 Seca4g02765 4 47655995 47659664 ECH