Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02752 ATGGGTTCGTTGTTTAGTGTGGCTAATACCAAATCTGATCGAAGTGAGTGGGATGGAGTCTCTCCAAATGAGACATGTAAGAGGCAAAGAATGTCACCTACTTTTGATGAAGAGAGTCCAAGACTAATTCCTAATCTCCCTGATGAGTTATCACTTCAGATTATTGCTAGACTTCCTAGAATTTGTCATTTCAATGCAAAGCAGGTATCAAGGAAGTGGAGGTCAACTATCATGAGTTCGGAACTATTTAAAGTAAGAAAAGAACTCGGTACAACTGAAGAGTGGCTATATCTGTTGGTTAAGGTTGGAGAAAATAAACTACTGTGGTATGCTTTAGATCCTCGCTCTCAGATATGGCAGAGACTGCCTATTATGCCCAACTTTGTTGATGAAGAAGAATCTAGAAAGGGTTCTAAGCTTTGGATGTGGAACATGGTGGAGGGTATCAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGGCAGAAGGATGCATTTGATGAAATGCCCTTTAGCGGCTGTGCTATTGGAGCTGTCGGTGGATGTCTCTATGTTCTAGGTGGATTCTCTAAAGCTTCAACCATGAGATGTGTCTGGCGATTTGATCCAATACAAAATACATGGAGCAAGGTGACTTCTATGTCCACAGGTCGGGCATATTGTAAAACAGGCATCTTGAATAACAAACTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGACTGGTACCTCTTCAGTCTGCTGAAGCTTATGACCCCTCTACAGATACATGGTCAGATGTTCCTAGCATGCCATTCTCAAGAGCTCAAGTTCTGCCCAGCGCTTTCTTGGCTGACATGTTAAAGCCGATTGCCACAGGGTTGACCTCATACATGGGAAGGTTGTGTGTTCCACAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGAAACAAATTCATGGATAGAAATGCCAAATGGAATGGGAGAGGGTTGGCCTGCACGGCAGGCAGGTACAAAATTGAGTGTTGTAGTGGATGGTGAACTATATGCTTTTGATCCTTCTAGCTCTATGGATAGTGGAAGGATCAAGGTATATGATCAAGGAGAAGATGCTTGGAAAGTTGTTATTGGAAAAGTCCCCATATATGATTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAACTTCATGTCATCACAAAAGATGCCGATCATAATATTTCTGTTCTGCAGGCTGATCTGCCTAATAATTTGGATTCTTCACCATCACCATCAACTCTGTCACAAAGTTCCATACATGAATTTCCGGAACCGGCTGCTGAATCAGATGCAGTTGTTTGGAAGGTAGTTGCCTGTAGGGGATTGGGACAGGCTGAACTAGTCAGTTGCCAAGTTATTGATATCTAG 1425 0.4239 MGSLFSVANTKSDRSEWDGVSPNETCKRQRMSPTFDEESPRLIPNLPDELSLQIIARLPRICHFNAKQVSRKWRSTIMSSELFKVRKELGTTEEWLYLLVKVGENKLLWYALDPRSQIWQRLPIMPNFVDEEESRKGSKLWMWNMVEGIRIAEVIRGFLGQKDAFDEMPFSGCAIGAVGGCLYVLGGFSKASTMRCVWRFDPIQNTWSKVTSMSTGRAYCKTGILNNKLYVVGGVSQGQAGLVPLQSAEAYDPSTDTWSDVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPNGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMDSGRIKVYDQGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDADHNISVLQADLPNNLDSSPSPSTLSQSSIHEFPEPAAESDAVVWKVVACRGLGQAELVSCQVIDI. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02752 474 SMART kelc_smart 181 227 IPR006652 GO:0005515
Seca4g02752 474 SMART kelc_smart 228 278 IPR006652 GO:0005515
Seca4g02752 474 Gene3D - 41 85 - -
Seca4g02752 474 CDD F-box_AtAFR-like 42 86 - -
Seca4g02752 474 PANTHER OS02G0202900 PROTEIN 27 472 IPR045887 -
Seca4g02752 474 SMART fbox_2 46 86 IPR001810 GO:0005515
Seca4g02752 474 SUPERFAMILY F-box domain 39 85 IPR036047 GO:0005515
Seca4g02752 474 SUPERFAMILY Kelch motif 103 405 IPR015915 GO:0005515
Seca4g02752 474 MobiDBLite consensus disorder prediction 421 440 - -
Seca4g02752 474 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Seca4g02752 474 Gene3D - 108 383 IPR015915 GO:0005515
Seca4g02752 474 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g02752 474 Pfam Kelch motif 169 214 IPR006652 GO:0005515
Seca4g02752 474 Pfam Kelch motif 217 265 IPR006652 GO:0005515
Seca4g02752 474 MobiDBLite consensus disorder prediction 1 40 - -
Seca4g02752 474 Pfam F-box domain 44 82 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02752 Seca-Chr4 47300328 47301752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02752 36 263 Miscellaneous Gene Families AT4G33900 27.660 9.96e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02752 - - gmx:100806691 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02752 4 47300328 47301752 Seca4g02752 4 47300328 47301752 ECH