Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02739 ATGGATGCTCAATCGGGTTTATCCCTCGGGTTGAACGCCCCGATTCCATCACCTGGGGCTATGTACACCCCATGGCGGTTACTCCACGAGAAATACGATGACAAGGCTCTCTTCAAACCCAAAGAAGAAGAAGAGGAAGAAGAAAGTGAGGTTGAAACAATCAACTTCATGGGTAGGCCTGTGTGCTTGAAGAGGCAGATAGAGGCACAGCAATCATGTTTTCCATCGAAGCGTGTGGCATTAGATTCAGGGGTTGAACCACGGCGGGATTGGGTGGTGGGTTGGGGGAACCAGCCACTGGGTGTTGCTGACCCTGAGATACACGAAATCATGGAGAAGGAGAAGTTGAGACAGTTCAGAGGAATAGAATTGATTGCCTCTGAGAACTTTGTGTGCAGGGCAGTGATGGAAGCACTGGGTAGCCATTTGACTAATAAGTACTCTGAGGGAATGCCTGGATCCAAGTACTATACGGGTAATCAGTATATTGATCAGATTGAGTTTCTTTGCTGCAATCGTGCATTGCTGGCCTTTGATCTTGATCCAAACAAATGGGGTGTTAATGTTCAGCCTTATTCATGCACTTCTGCAAATTTTGCTGTCTACACTGGTCTTTTGCACCCTGGGGATCGGATTATGGGTCTGGATTCACCCTCTGGTGGACATTTGAGTCATGGATATTATACTTTGGGTGGGAAGAAAGTTTCTGCAGCATCTATATTCTTTGAGACTCTGCCTTACAAGGTCAATCCTCAAACTGGCTACATAGACTATGACAAACTTGAGGAAAAAGCACTTGATTTTCGACCCAAGATACTTATCTGTGGTGGCAGTTCCTATCCCAGAGAATGGGATTATGGGAGGTTCAGGCAGATTGCTGATAAGTGTGGGGCAGTCTTGATGTGTGACATGGCTCATATCAGCGGTCTTGTGGCAGCTAAGGAAGCAGCTAGTCCATTTGATTACTGTGATATTGTGACCTCAACAACCCACAAAAGTCTCCGAGGTCCAAGGGGAGGTGTGATCTTTTACAGAAGAGGGACAAGACCAAGGAAGCAAGGCTTCGTTCTTAACCATGGGGATGATAGTAATTATGATTTTGAGGAGAAGATAAACTTTGCTTTATATCCATCATTACAAGGAGGCCCCCACAATAATCACATTGCTGCTCTTGCCATAGCTTTAAAACAAGTTGCAACTCCAGAGTACAAAGCATATATGCAGCAGGTGAAGAAAAATGCACAGGCATTAGCATCTGCCTTGTTAAGAAGAAAATGCAGATTGGTGACTGATGGAACAGACAATCATCTTTTGCTCTGGGATCTAACTGCACTGGGCTTGATTGACAGAAACTATGAGAAAGTCTGCGAGGCGTGTCACATCACTCTTAATAAATGTGCCATTTATGGTTCTATTTCTCCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCAAGAGGCTGTTTAGAGGATGATTTTGAGACCATAGCCGATTTTCTTCTGAGGGCAGCTCAGATTACCAGCATTATGCAGAGGGAACATGGAAAATCATGTAAAGATTTTCTCAAGGGTCTTCAGAATAATAAAGATATTTGTGAACTCAGAAATCGAGTTGAGACATTTAGTTCACAATTTGCAATGCCAGGATTCGATATTTGA 1662 0.441 MDAQSGLSLGLNAPIPSPGAMYTPWRLLHEKYDDKALFKPKEEEEEEESEVETINFMGRPVCLKRQIEAQQSCFPSKRVALDSGVEPRRDWVVGWGNQPLGVADPEIHEIMEKEKLRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGSKYYTGNQYIDQIEFLCCNRALLAFDLDPNKWGVNVQPYSCTSANFAVYTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVSAASIFFETLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLVAAKEAASPFDYCDIVTSTTHKSLRGPRGGVIFYRRGTRPRKQGFVLNHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTDGTDNHLLLWDLTALGLIDRNYEKVCEACHITLNKCAIYGSISPGGVRIGTPAMTSRGCLEDDFETIADFLLRAAQITSIMQREHGKSCKDFLKGLQNNKDICELRNRVETFSSQFAMPGFDI. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02739 553 Pfam Serine hydroxymethyltransferase 102 500 IPR039429 -
Seca4g02739 553 CDD SHMT 104 542 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Seca4g02739 553 Hamap Serine hydroxymethyltransferase [glyA]. 99 550 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Seca4g02739 553 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 324 340 IPR019798 GO:0030170
Seca4g02739 553 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 91 552 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Seca4g02739 553 FunFam Serine hydroxymethyltransferase 129 347 - -
Seca4g02739 553 SUPERFAMILY PLP-dependent transferases 96 550 IPR015424 -
Seca4g02739 553 Gene3D - 129 408 IPR015421 GO:0003824
Seca4g02739 553 Gene3D Aspartate Aminotransferase, domain 1 104 549 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02739 Seca-Chr4 47052001 47056383 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02739 K00600 - gmx:100776419 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02739 4 47052001 47056383 Seca4g02739 4 47052001 47056383 ECH