Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02732 ATGGAAAATGAAAAAAATAAATTGATTCAAACAGTATCAACTTTATCAGCAAACAAAGTTACTTCCAAGGAGAAATATCTCCGCTTACAAGCAGAATTTGATAATTTTAGGAAAAGATCTGACAAAGAAAGAATTAACATCCAATCTGATGCACAACAAGAAGTTATTGAAAAACTTTTGTTGATGGTGGACAATTTTGAGCAAGCCAAACAACAAATTAAAGCAACAACAGAGAAAGAGAAGAGGATTGATGCAAGCTATCAAGGAATTTACAAGCAATTTGTAGAGATTATGAAGAGCCATCATGTTTCTGTGGTAGCAACAGTGGGCAAACCCTTTAATCCCTTGCTTCATGAAGCCATTGCACGTGAGGAGTCTCTAGAGTACAAGGAAGGGATTATAATTAAAGAATGTAAACGTGGTTTCTTACTCAGAGATCAGGTTCTAAGGCCAGCACTTGTGAAGGTTTCCTTAGGTCCTGGCAATAAGAAATCTCCAGTGACTCCTGCCAAGTCCATGGAGCAGCCTTCAACTGCTGCTGGAATAGATGAAAGATAG 558 0.3763 MENEKNKLIQTVSTLSANKVTSKEKYLRLQAEFDNFRKRSDKERINIQSDAQQEVIEKLLLMVDNFEQAKQQIKATTEKEKRIDASYQGIYKQFVEIMKSHHVSVVATVGKPFNPLLHEAIAREESLEYKEGIIIKECKRGFLLRDQVLRPALVKVSLGPGNKKSPVTPAKSMEQPSTAAGIDER. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02732 185 MobiDBLite consensus disorder prediction 158 185 - -
Seca4g02732 185 Gene3D Head domain of nucleotide exchange factor GrpE 103 157 IPR009012 GO:0006457
Seca4g02732 185 ProSitePatterns grpE protein signature. 113 156 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 Coils Coil 56 76 - -
Seca4g02732 185 Hamap Protein GrpE [grpE]. 2 158 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 PRINTS GrpE protein signature 110 125 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 PRINTS GrpE protein signature 27 43 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 PRINTS GrpE protein signature 55 70 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 PRINTS GrpE protein signature 137 156 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 FunFam Protein GrpE 102 157 - -
Seca4g02732 185 PANTHER GRPE PROTEIN 2 163 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 8 101 IPR013805 -
Seca4g02732 185 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 104 158 IPR009012 GO:0006457
Seca4g02732 185 Gene3D - 1 100 IPR013805 -
Seca4g02732 185 Pfam GrpE 3 157 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Seca4g02732 185 CDD GrpE 23 156 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02732 Seca-Chr4 46977461 46979689 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02732 K03687 - gmx:100809893 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02732 4 46977461 46979689 Seca4g02732 4 46977461 46979689 ECH