Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02708 ATGTCTCAAATCACAATAAAATCTCCAAAACACTGTGCTAGCAAGCAAGGACTGAAACTTGAGAGGAACTACAAGAAGCTCTACTTTGTTTTCTCAGCATTTTTCACCACAATCCTATTACTAATACTTCTTATTTGGCTCATCCTCCACCCTGCCAAGCCTCAATTCTCCCTCAAAGAAGTTGATATCTTCCAGCTGAACCTTTCAGGACCAAACCTCAACTCCTCCATCCAACTCACCCTCCTCTCCAAGAACCCAAACCAGAAAGTTAGCATTTACTATGATGAGTTTCAGCTTTATGCAACTTACAAGGGTCAGCAGATAACTGGTGATACCCCTGTTCCTCCCTTTTACCAAGGCCAGGAAGAGAGTAATCTCATAACAGCCTCTTTGGTAGGAAATGGAATACCTGTGGCTCCTTCTCTTGGTTATGAAGTGGGTCGTGATCAAAGTGCTGGAAGAATAGTTTTGATTCTCAAAGGTATTGGAAAGCTTCGTTGGAAGGTGGGAACTTGGGTTTCTGGACATTACAGGTTCAATGTTAATTGTGTTTCTGTCATGGCCTTTGGACCCTCTATGGTTGGAGCTCCTCTGTTTTCAACACAGGGGGCTCAGTGTTCTACCACAATTTAA 633 0.4297 MSQITIKSPKHCASKQGLKLERNYKKLYFVFSAFFTTILLLILLIWLILHPAKPQFSLKEVDIFQLNLSGPNLNSSIQLTLLSKNPNQKVSIYYDEFQLYATYKGQQITGDTPVPPFYQGQEESNLITASLVGNGIPVAPSLGYEVGRDQSAGRIVLILKGIGKLRWKVGTWVSGHYRFNVNCVSVMAFGPSMVGAPLFSTQGAQCSTTI. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02708 210 PANTHER OS05G0367900 PROTEIN 24 187 IPR044839 GO:0098542
Seca4g02708 210 Pfam Late embryogenesis abundant protein 80 183 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02708 Seca-Chr4 46467329 46467961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02708 27 183 EF-hand Containing Proteins AT5G21130 22.981 5.92e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02708 - - gmx:100783857 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02708 4 46467329 46467961 Seca4g02708 4 46467329 46467961 ECH