Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02706 ATGCCAATGGCCACTACCTTCAACTTCCACACCACCCTTCGCCCCTCTTGTTACCCTTCTTCTACGCTCTCTCTACCTTCTCCGCCTCACTTCTCCACAAGACCCTTCTCCACTTTCTTGGGCTCAGCCCAAAGGCTCAAACATGCCACCGCACCCACAACTACCAACCGTTCCGCTTCACTCTCCGTTCGTATGTCATGGGACGGTCCACTCTCTTCCGTCAAATTGATCATCCAGGGTAAAAACCTTGAGCTAACTGATGCAGTGAAGCAGCACGTGGAGGACAAATTGGGAAAGGCGGTTCAGAAGCACAGCCACATAGTCAGGGAGGTTGATGTGAGGCTATCTATTCGAGGAGGAGGAGAATTTGGCCGAGGACCCAGGACACGTAGATGTGAGGTGACTTTGTTTACAAAGAGGCATGGAGTGGTGCGTGCTGAGGAGGATTCAGAAACTACCTATGGAAGTATAGATTTGGTGTCCTCAATCATTCAGAGAAAGTTGAGGAAGATAAAGGAAAAGGAATCAGATCATGGTCGTCACATGAAGGGATTTAATAGGTTGAAGGTTAGGGAGCCAGTAGAAGAGAAAGTACCCTTGGATGAGGATGAAATGTTCCCACAGGAGGAGGAAGAATCTATTGATGAGGTTGGGCTGTTTTTACAGGTTGTTCGGACAAAATACTTTGACATGCCACCATTAACTGTGTCTGAAGCAATTGAGCAGCTTGTAAATGTTGATCATGACTTTTATGCTTTTCGAAATGAAGAAACAGGGGAGATTAATATTGTATACAAAAGAAAAGAAGGAGGTTATGGACTCATTATACCCAAAGGAGATGGTGGAGCAGAGAAATTGGAGTCTTTAGTGGTTGAACCAGATAGAGAACACTCTCTGAAAGAATGA 906 0.457 MPMATTFNFHTTLRPSCYPSSTLSLPSPPHFSTRPFSTFLGSAQRLKHATAPTTTNRSASLSVRMSWDGPLSSVKLIIQGKNLELTDAVKQHVEDKLGKAVQKHSHIVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDSETTYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVEEKVPLDEDEMFPQEEEESIDEVGLFLQVVRTKYFDMPPLTVSEAIEQLVNVDHDFYAFRNEETGEINIVYKRKEGGYGLIIPKGDGGAEKLESLVVEPDREHSLKE. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02706 301 PANTHER 30S RIBOSOMAL PROTEIN 60 287 - -
Seca4g02706 301 CDD RaiA 75 174 IPR003489 GO:0044238
Seca4g02706 301 NCBIfam ribosome-associated translation inhibitor RaiA 75 179 IPR003489 GO:0044238
Seca4g02706 301 Hamap Ribosome hibernation promoting factor [hpf]. 74 278 IPR034694 -
Seca4g02706 301 FunFam Ribosome-binding factor PSRP1, chloroplastic 76 179 - -
Seca4g02706 301 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 77 174 IPR003489 GO:0044238
Seca4g02706 301 FunFam ribosome-binding factor PSRP1, chloroplastic 233 284 - -
Seca4g02706 301 Gene3D - 75 179 IPR036567 -
Seca4g02706 301 Gene3D - 233 281 IPR038416 -
Seca4g02706 301 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 222 274 IPR032528 -
Seca4g02706 301 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 75 181 IPR036567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02706 Seca-Chr4 46402521 46405296 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02706 - - gmx:100803327 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02706 4 46402521 46405296 Seca4g02706 4 46402521 46405296 ECH