Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02603 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCTGAGACCTTGGCTAGGACCAGGCCACGCTATAACCACCACTACAACAACAACACCAGCGCCCACCGCCATCGCGGCGGCGGCGGAGGTGGTGGTGGCCGCCAGCACCCTAAGACACAGGACTCGCCGTTAACGGTCACCACCAGTTACCGCATTTTGTGCCACGACCTGAAGGCCGGTGGCGTGATTGGGAAATCCGGCAGCATTATAAAGTCCATTAGACAGCACACCGGCGCGTGGATCAACGTGCATGAGCTGATCCCCGGCGATGAGGAGCGAATCATCGAGATTTCTGACACGCGCCGGCGGGACCCGGAGGGAAGGATGCCGTCGTTCTCGCCGGCGCAGGAGGCGCTGCTGCTGATCCACGAGAGGATTCTGGAGAGCGATGCGGCGTTTGGGGTGGGGGAAGAGGAGGAGGAGTATGGCGGCGGAGGTGGCGGTGGCGGCGGTGGTGGGAGAGGGGGCAACCGTGTGGCGACGAGGTTGGTGGTGTCGAGAATGCACGTTGGGTGTTTGTTGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAACCAAGACTCAAATTAGGATACTCCCTAGAGATCACAATCTACCTCGTTGTGTTACAATGTCAGAAGAGATTGTTCAGGTTGTAGGTGATGTAAATGCTGTAAAGAATGCTCTAGTGATTATATCAGGCCGGTTGAGGGAGAGCCAGCATCGTGATCGTGGTCATTTCCATGGACGTGTACATTCACCAGAGAGATTTTTCTCTCCTGATGATGATTATATTCCTCATGTGACTAGTGGATCTCGTAGATCATCTATGGATGGGGCTGCTTTTGGATCAAGAGTAGCTTCTGCCAATACCAGAAACAATAGTCACCCTTCATTAGGTTATGCAATGGAGCCAGGGGCTGCTCCTGTGGCTGATGATGCACAGCCCTTCTATGGAGAGGACCTTGTTTTTCGCATACTCTGTCCAGTTGAGAAAGTTGATCGTATTATTGGGGAATCAGATGGATTTGTAGAGTTCCTTCAGAATGAAGTTGGGGTAGATGTTAAAGTCACTGATCCTGTTGGTGGCTCAGATGAACAGATAATTATCGTTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAGGAAGCTTTGCTACATATACAAACTCACATTGTCGATCTTCTAGATAAGGACAATACTATAACGACCAGGCTTGTTGTCCCTTCTAGTGATATTGAATGCTTAGATGGAAAAGAGGCATCACTGTCAGAAATTAAGAGGTTGACTGGTGCTAATATTCAAATATTGCCTAGAGAAGAACTACCTCTCTGTGTTGCAAAAACTGATGAACTGGTACAGATTGTGGGAGAGATAACAGCAGCCCGCGATGCTGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTGTATAGGGATTTCTTTCAAAGGGACACCGTACCACCATCGGCTTCCTTACCTGGTGTGGAGGCATCTTCTTCCAATAATATAGCTTCAGTTACTGAAACTCCCACAACCTATCAGAATGTGCAAAGTGTGGCAGCAGCCCTTCCATCCAAGGAAACCGGAGGATCTAGCACTGAGACAGGAAAGCAGAAAGAGAGTGACCGCAGCGATGATGTGCTTAGTGGCTTAAATAGGATCGCTGTGCCTCTTGTCACAAGGAGTACACTTGAAGTTGTTATACCAGAGTATGCAGTTCCAAAACTTATAGCAAAATCCAAAAGCAAGCTTGCACAGATAAGTGAGGTGTGA 1824 0.4885 MERSRSKRNYYYDQDYDSETLARTRPRYNHHYNNNTSAHRHRGGGGGGGGRQHPKTQDSPLTVTTSYRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGVGEEEEEYGGGGGGGGGGGRGGNRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVTMSEEIVQVVGDVNAVKNALVIISGRLRESQHRDRGHFHGRVHSPERFFSPDDDYIPHVTSGSRRSSMDGAAFGSRVASANTRNNSHPSLGYAMEPGAAPVADDAQPFYGEDLVFRILCPVEKVDRIIGESDGFVEFLQNEVGVDVKVTDPVGGSDEQIIIVTSEEGPDDELFPAQEALLHIQTHIVDLLDKDNTITTRLVVPSSDIECLDGKEASLSEIKRLTGANIQILPREELPLCVAKTDELVQIVGEITAARDAVVEVTSRLRSYLYRDFFQRDTVPPSASLPGVEASSSNNIASVTETPTTYQNVQSVAAALPSKETGGSSTETGKQKESDRSDDVLSGLNRIAVPLVTRSTLEVVIPEYAVPKLIAKSKSKLAQISEV. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02603 607 ProSiteProfiles Type-1 KH domain profile. 175 245 - -
Seca4g02603 607 CDD KH-I_PEPPER_rpt1_like 334 402 - -
Seca4g02603 607 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 328 390 IPR036612 GO:0003723
Seca4g02603 607 CDD KH-I_PEPPER_rpt2_like 419 490 - -
Seca4g02603 607 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 256 IPR036612 GO:0003723
Seca4g02603 607 ProSiteProfiles Type-1 KH domain profile. 64 136 - -
Seca4g02603 607 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 412 497 IPR036612 GO:0003723
Seca4g02603 607 CDD KH-I_PEPPER_rpt2_like 178 250 - -
Seca4g02603 607 Gene3D - 333 493 - -
Seca4g02603 607 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 328 544 - -
Seca4g02603 607 MobiDBLite consensus disorder prediction 16 60 - -
Seca4g02603 607 Gene3D K Homology domain, type 1 62 174 IPR036612 GO:0003723
Seca4g02603 607 Gene3D K Homology domain, type 1 175 254 IPR036612 GO:0003723
Seca4g02603 607 MobiDBLite consensus disorder prediction 539 563 - -
Seca4g02603 607 Pfam KH domain 178 245 IPR004088 GO:0003723
Seca4g02603 607 Pfam KH domain 67 115 IPR004088 GO:0003723
Seca4g02603 607 SMART kh_6 333 406 IPR004087 GO:0003676
Seca4g02603 607 SMART kh_6 416 490 IPR004087 GO:0003676
Seca4g02603 607 SMART kh_6 63 144 IPR004087 GO:0003676
Seca4g02603 607 SMART kh_6 174 250 IPR004087 GO:0003676
Seca4g02603 607 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 61 115 IPR036612 GO:0003723
Seca4g02603 607 ProSiteProfiles Type-1 KH domain profile. 334 401 - -
Seca4g02603 607 CDD KH-I_PEPPER_rpt1_like 64 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02603 Seca-Chr4 44559820 44565254 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02603 K21444 - gmx:100804167 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02603 4 44559820 44565254 Seca4g02603 4 44559820 44565254 ECH