Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02602 ATGGAAGCTTCGTTTGTTCTTCCCTCGCCCTCTTTCACTGGATTCAGGATTAGGACAAGCAAAGAGCGGAAGCATATGCTGTCACTGTGTGAGTTGAAAAGTATAATATGCTTCTCAGTGTGTAATCAAAAGCAGAGTTACAATGAAAAGCTGTACATTATACCCATTAGGTCCATTTCTCGATTCTGCGTTTCAAGATCGTCAGTTAGGTCATTGGAATTCAGTGGGACAAGCCCACATAGTGATGCACATTCAGGCTTTTCAGCTCCAAATGATTATCAGAGAACCAGCAATTTTGAGAGAGAGTTGGAAGAATTATTTGCTGAAGTGAAAAGAATGATTAAGATGGGAAACAAAAATGATGCTATAGACCTTCTGAATGCAAATTATGAACTGGTGAAAGAGCAGCTGAATGCAGGCACTGAAGGCATAGAAGAAGTTGCAACTTTAGACATCCTAGCACTGGGTTACATGGCTGTTGGAGATTTAAAATCTGTTGGTTCTCTGTTGAATTTGATGAAAGAAATTATTGACAATTTAAAGGATGATGCACCACATCTAGATTCAATACTTATGCATATGGGAAGTATGTATGCGACATTGAATAAGTTTGAAAAATCATTGGATACATATCAAAGGGCTGTGTACATTATGGAGAGGACCTATGGTAAGGATAGCACTGTCCTCGTCACACCCCGTTTGGGTATGGCAAAAGTTCTTGGTTCTATTGGAAAGGCAACAAAAGCAATAGAGATATACCAGCATGTAATCACTCTCTTGGAATCAAATAGAGGTGCTGAAAGTAAGGATTTGGTTGTACCTTTACTTAGTCTTGGCAATCTTTTACTGAAAGAAGGAAGAGCCAAAGATGCAGAAAGTCATTATACTAGGGTTTTAAACATATACACTAAAGTATATGGACAAAATGACGGAAGAATTGGAATGGCTATGAGTTCCCTAGCCCAAGTGAAGTGTGCTCTAGGGAAGTCAGATGAAGCAATTAATTTGTTTAAAAGTGCTCTTAAGGTCATGAAGGATTCAAATTACATGTCACTGGATGACAGTATAATGGAAAAGATGAGGATAGATCTAGCTGAATTACTCCATGCCGCTGGAAGGTAG 1122 0.3877 MEASFVLPSPSFTGFRIRTSKERKHMLSLCELKSIICFSVCNQKQSYNEKLYIIPIRSISRFCVSRSSVRSLEFSGTSPHSDAHSGFSAPNDYQRTSNFERELEELFAEVKRMIKMGNKNDAIDLLNANYELVKEQLNAGTEGIEEVATLDILALGYMAVGDLKSVGSLLNLMKEIIDNLKDDAPHLDSILMHMGSMYATLNKFEKSLDTYQRAVYIMERTYGKDSTVLVTPRLGMAKVLGSIGKATKAIEIYQHVITLLESNRGAESKDLVVPLLSLGNLLLKEGRAKDAESHYTRVLNIYTKVYGQNDGRIGMAMSSLAQVKCALGKSDEAINLFKSALKVMKDSNYMSLDDSIMEKMRIDLAELLHAAGR. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02602 373 SMART tpr_5 230 263 IPR019734 GO:0005515
Seca4g02602 373 SMART tpr_5 188 221 IPR019734 GO:0005515
Seca4g02602 373 SMART tpr_5 314 347 IPR019734 GO:0005515
Seca4g02602 373 SMART tpr_5 272 305 IPR019734 GO:0005515
Seca4g02602 373 Pfam MalT-like TPR region 174 364 IPR041617 -
Seca4g02602 373 Gene3D Tetratricopeptide repeat domain 94 371 IPR011990 GO:0005515
Seca4g02602 373 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 97 353 - -
Seca4g02602 373 SUPERFAMILY TPR-like 236 347 IPR011990 GO:0005515
Seca4g02602 373 SUPERFAMILY TPR-like 114 263 IPR011990 GO:0005515
Seca4g02602 373 ProSiteProfiles TPR repeat profile. 188 221 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02602 Seca-Chr4 44553727 44557616 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02602 - - lja:Lj1g3v0985630.1 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02602 4 44553727 44557616 Seca4g02602 4 44553727 44557616 ECH