Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02590 ATGGAGTCTCTGGAACTTGCTCGTCTCCTTCTCTATCCGCGCACATCATCACCGCCAACTCAACCTTCACGGTTGATAACGCAACTGCCTTTCCCCTCTCTGCTCAAAACAGCAACTAAGAATGCCACCTTGCGATCATTTCCCGGCGACTCCGAAGGCGGTGCCACCGCTTCACAAGACGAACCTTTTGCTTTCCAAGACGAAAACCGTAAAGAAGAAAAGGCTCTCGTATTAGCTCGGGAAATGGACGCTTTTGGCTATCTAATCGGCTTTCGCTTGATTCCTGACTCTGGGAAGAGTTCATATTCACATGCAGGGAACGTGACTGAGGAAGATTCAACTAGCGATGAAGTTGAAGAATCCGAGACTGAGAATATAGAAGAAGACAAAGCTCAGACTAGAGTTTCCTACAACATTGTTTTCGTTACTGCCGAAGCTGCACCTTATTCAAAGACTGGTGGCCTTGCAGATGTTTGTGGTTCTCTGCCAATAGCATTAGCAGCTCGTGGACATCGTGTCATGGTTATCTCTCCCAGATACATAAATGGTACTCCCCAGGATAATAAGTTTTCTGGTGCTGTTGATCTTGAATGCTGCATCAAAGTACATTGCTATGGAGGTGCTCAAGAAGTTGGCTTTTTCCATGAGTACAGGGATGGTGTTGATTGGGTGTTTGTAGATCACCCCTCTTTCCATAGACCAGGCAATCCATATGGGGACATGTACGGGTCTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTGCCATGCAGCATGTGAAGCCCCTTTGGTGCTTCCATTGGGAGGGTTCACTTATGGAGAAAAATGTTTATTCCTTGTTAATGATTGGCATGCCAGCCTAGTCCCAGTACTTTTGGCAGCGAAATATCGTCCACATGGGGTATACAAGGATGCACGTAGTATATTAGTGATTCATAATATTGCACACCAGGGAGTGGAACCTGCAATTACATATAGTAATTTGGGGCTACCTCCAGAATGGCTTGGAGCATTGGAATGGGTGTTCCCTACATGGGCAAGGACGCATGCTCTTGACCCTGGTGAAGCTGTCAATTTTCTCAAAGGTGCCATTGTTACAGCTGACCGGATAGTAACAGTAAGCAAGGGCTATTCCTGGGAGATAACAACTAGTGAAGGTGGATATGGTCTACATGAGCTATTAAGCAGTCGAAAAAGTATTCTCAGTGGGATCACAAATGGGATTGATGTTACTGAATGGGACCCCTCATCTGATCAACATATTGCTTGCAACTATTCTGCTGATGACCTTTCTGGGAAGGTCAAATGCAAGATTTCTTTGCAGAAGGAATTGGGTCTTCCAGTGAGGCCTGAATGTCCATTGATTGGATTCATTGGAAGACTTGACTACCAGAAAGGTATTGACCTGATTCGCCCGGCGATTCCGGAGCTCATGGAAGATGATGTTCAGTTTGTAATGCTTGGTTCAGGAAACCCTATTTATGAAGACTGGATGAGAGCAACAGAGTTGACTTATAAAGATAAATTTCGGGGTTGGGTTGGATTTAATGTTCCAATTTCTCATAAAATAACTGCAGGCGCTGATATACTGTTAATGCCATCCACATTTGAGCCTTGTGGACTAAATCAGTTATATGCAATGAGATATGGAACTATACCAGTGGTTCATGAAACTGGGGGACTAAGAGATACTGTTCAAAATTTTAATCCATATGCTGAAGGAGGCGATGCTGAAGGCACGGGGAACTTGTCTAACAGGTGGACGTTTTCTCCACTAACAAAGGAGAGCATGTTAGTGGCTTTAAGATATGCTATTCAAACATTTAATGAATATAAGTCTTCATGGGAGGGATTGATGAAAAGAGGTATGACGAGAGATTACACATGGGTAAATGCTGCCACTCAATACGAGCAAGTCATTGAGTGGTCATTCATGGATCCACCCTATTGCTGA 1956 0.4412 MESLELARLLLYPRTSSPPTQPSRLITQLPFPSLLKTATKNATLRSFPGDSEGGATASQDEPFAFQDENRKEEKALVLAREMDAFGYLIGFRLIPDSGKSSYSHAGNVTEEDSTSDEVEESETENIEEDKAQTRVSYNIVFVTAEAAPYSKTGGLADVCGSLPIALAARGHRVMVISPRYINGTPQDNKFSGAVDLECCIKVHCYGGAQEVGFFHEYRDGVDWVFVDHPSFHRPGNPYGDMYGSFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPHGVYKDARSILVIHNIAHQGVEPAITYSNLGLPPEWLGALEWVFPTWARTHALDPGEAVNFLKGAIVTADRIVTVSKGYSWEITTSEGGYGLHELLSSRKSILSGITNGIDVTEWDPSSDQHIACNYSADDLSGKVKCKISLQKELGLPVRPECPLIGFIGRLDYQKGIDLIRPAIPELMEDDVQFVMLGSGNPIYEDWMRATELTYKDKFRGWVGFNVPISHKITAGADILLMPSTFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQNFNPYAEGGDAEGTGNLSNRWTFSPLTKESMLVALRYAIQTFNEYKSSWEGLMKRGMTRDYTWVNAATQYEQVIEWSFMDPPYC. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02590 651 MobiDBLite consensus disorder prediction 44 67 - -
Seca4g02590 651 Pfam Starch synthase catalytic domain 138 396 IPR013534 -
Seca4g02590 651 FunFam Starch synthase, chloroplastic/amyloplastic 138 423 - -
Seca4g02590 651 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 127 643 - -
Seca4g02590 651 Gene3D Glycogen Phosphorylase B; 411 627 - -
Seca4g02590 651 Gene3D Glycogen Phosphorylase B; 157 640 - -
Seca4g02590 651 Hamap Glycogen synthase [glgA]. 137 644 IPR011835 GO:0004373
Seca4g02590 651 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 82 650 - -
Seca4g02590 651 MobiDBLite consensus disorder prediction 100 129 - -
Seca4g02590 651 CDD GT5_Glycogen_synthase_DULL1-like 138 643 - -
Seca4g02590 651 Pfam Glycosyl transferases group 1 454 570 IPR001296 GO:0016757
Seca4g02590 651 MobiDBLite consensus disorder prediction 112 126 - -
Seca4g02590 651 NCBIfam glycogen/starch synthase, ADP-glucose type 138 640 IPR011835 GO:0004373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02590 Seca-Chr4 44440235 44447482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02590 138 641 Glycosyltransferase AT3G01180 51.076 3.47e-170 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02590 K00703 - gmx:100807354 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02590 4 44440235 44447482 Seca4g02590 4 44440235 44447482 ECH