Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02585 ATGGCTGCTGCTGCTGCGTTTCGATCCAAGCCTTCTAGTTACAAAGAAACAGCGACCATCGCACTCTCCCAGTTGAGGTACTTTGCGTTCAACTATATGCATGCTTGCAATCCTCACTGCCCTCCACGTTCTACGCTCATCAACGCTCCCTATCACTTCACCTCCTTCAAACCCCTCTCTCTTCGCGGCGATTTCATCCAAAAGGGTACCCATTTCGCACCCAACCCCAACCATGGTGGTTCTGATAATAGAAGAGGGTACAACGCTGTTAGCTCCTCCGGGGACCCGCCCGAAGTTTGGTCTGGTGGTGGGATTGTTGTTCGGCCGGGGAATTCCAGTTTCGACATCTCTGGCGGTGGCGGCGGAGGTGGTGCCGCGAGTTCCGGGGATTTGGGGTCGTCGAATTCGAAGGAAGGGTGCTGGGGTGGGTCCAATTTGGGGGGAAGTTTCCCAACGCCGAAAGAGATTTGCAAGGGGCTTGACAAGTTCGTAATTGGACAGGAGAGGGCCAAGAAGGTGCTTTCTGTGGCAGTTTATAATCATTATAAGAGAGTGTTTCATGAATCATCATCCAAGTCCAAGTGGCCTGCAGGAGATTTAAGTGATAATGGTAAAGCTGATGCTGTGGATGATGATAGAGTTGAACTTGAGAAAAGCAATATCCTTCTAATGGGGCCAACAGGATCAGGGAAAACCTTACTTGCCAAAACCTTGGCTCGGTTTGTAAATGTTCCCTTTGTTATTGCTGATGCAACTACACTCACTCAGGCAGGTTATGTTGGTGAAGATGTGGAGTCCATATTATACAAGCTCCTCATGGCGGCAGATTATAATGTGGCAGCTGCACAGCAAGGCATTGTTTACATTGATGAAGTTGACAAGATTACCAAAAAGGCTGAGAGCCTTAATATCAGTAGAGATGTCTCTGGTGAAGGTGTTCAACAGGCTTTACTGAAGATGCTTGAGGGAACGGTTGTTAATGTTCCTGAGAAGGGAGCCCGAAAGCATCCCAGAGGTGACAATATTCAGATTGACACAAAGAACATACTTTTCATTTGTGGAGGGGCGTTTGTTGACTTAGAGAAAACAATCTCAGAAAGGCGTCAAGATTCTTCTATTGGATTTGGGGCACCTGTACGAGCAAAGATGAGGGCTGGCAGTGTCACAGATGCGGCTGTTGCATCAACATTACTAGGAACTGTTGAGAGTAGTGATCTTATTGCATATGGTTTAATACCTGAGTTTGTTGGGCGGTTTCCTATCCTTGTCAGTTTGTCAGCTTTAACTGAAAATCAACTCATTCAGGTTCTCACGGAGCCGAAAAATGCTCTGGGGAAGCAATACAAGAAGATGTTTCAAATGAATGGAGTAAGTTTTCACAACTTACAAGTCTCTCTTATTCCATTGTATATATTACAGTTTGTATGCTTTATCTCCAGTGGTTTAAGCATGAAGAGTTACAACAGCAGGCCAGACACTGCATTTTAA 1488 0.4603 MAAAAAFRSKPSSYKETATIALSQLRYFAFNYMHACNPHCPPRSTLINAPYHFTSFKPLSLRGDFIQKGTHFAPNPNHGGSDNRRGYNAVSSSGDPPEVWSGGGIVVRPGNSSFDISGGGGGGGAASSGDLGSSNSKEGCWGGSNLGGSFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRVFHESSSKSKWPAGDLSDNGKADAVDDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMAADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRQDSSIGFGAPVRAKMRAGSVTDAAVASTLLGTVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLTEPKNALGKQYKKMFQMNGVSFHNLQVSLIPLYILQFVCFISSGLSMKSYNSRPDTAF. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02585 495 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 149 459 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Seca4g02585 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 453 IPR027417 -
Seca4g02585 495 SMART AAA_5 217 379 IPR003593 GO:0016887
Seca4g02585 495 Gene3D - 427 464 - -
Seca4g02585 495 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 49 460 - -
Seca4g02585 495 Pfam AAA domain (Cdc48 subfamily) 217 421 IPR003959 GO:0005524|GO:0016887
Seca4g02585 495 Gene3D - 146 426 IPR027417 -
Seca4g02585 495 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 144 426 - -
Seca4g02585 495 MobiDBLite consensus disorder prediction 74 90 - -
Seca4g02585 495 MobiDBLite consensus disorder prediction 111 134 - -
Seca4g02585 495 CDD RecA-like_ClpX 151 425 - -
Seca4g02585 495 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02585 Seca-Chr4 44331119 44337917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02585 221 320 Miscellaneous Gene Families AT3G02450 35.644 5.04e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02585 K03544 - cave:132181494 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02585 4 44331119 44337917 Seca4g02585 4 44331119 44337917 ECH