Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02578 ATGGGCTGCTTTTATTCAACTTCAAATAAAGCTGAGATACCAGGTTACGAGGAACCCACTGTTCTTGCTTCTGAGACACCTTGTGAGTATCCATCATCAAGTGTTTCTGTGAGTGAAGTAGAGGCGTTATATGAACTCTATAAGAAGTTGAGCAATTCAATTATTGAAGATGGTCTCATTCACAGGGAAGAATTCCAGCTGGCACTCTTCAGGAATAAAAACAAGAGGAATCTGTTTGCAGACAGGATTTTTGACTTATTTGATGTCAAGCGCAACGGTGTCATTGAGTTCGGGGAATTTGTTCGATCACTGGGTGTATTTCATCCAAATGCAGCTTTAGAAGACAAGATTGCATTTGCTTTTAGGTTGTATGATCTGAGACAGACAGGGTACATTGAACGAGAAGAGTTAAAGGAGATGGTGTTGGCACTTCTGCATGAATCGGATCTTGTGCTTTCAGATGATATGATAGAAACCATTGTGGATAAGACATTTAAAGATGCTGATACAAAAGATGATGGAATCATTGATCAAGATGAGTGGAAAACATTTGTCTCTAAACATCCATCATTGATAAAGAACATGACTCTTCCATATCTAAAGTCAGGATATTTCCTTAGCATTCCCCAGTTTTGTCGTCAGCACAGAAGTGGAAGACTCAGAGGTGTGAGTACTTTGGGAGGTTTTGGCTTCACCGTGGATGATGTAATTTTATTACATGATCTCCTGAATTACTGTTGCTGTGTTGCCAGTGACAAGGATATCCATGCAATCTCGTCTATGGTTCGAGAGCAAAAACTTCTAGCTTTGCAATTTGCAGAATAA 825 0.3952 MGCFYSTSNKAEIPGYEEPTVLASETPCEYPSSSVSVSEVEALYELYKKLSNSIIEDGLIHREEFQLALFRNKNKRNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPNAALEDKIAFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSDDMIETIVDKTFKDADTKDDGIIDQDEWKTFVSKHPSLIKNMTLPYLKSGYFLSIPQFCRQHRSGRLRGVSTLGGFGFTVDDVILLHDLLNYCCCVASDKDIHAISSMVREQKLLALQFAE. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02578 274 SUPERFAMILY EF-hand 34 203 IPR011992 -
Seca4g02578 274 Gene3D - 31 218 - -
Seca4g02578 274 FunFam calcineurin B-like protein 3 27 217 - -
Seca4g02578 274 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Seca4g02578 274 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Seca4g02578 274 PRINTS Recoverin family signature 176 196 - -
Seca4g02578 274 PRINTS Recoverin family signature 130 148 - -
Seca4g02578 274 PRINTS Recoverin family signature 83 104 - -
Seca4g02578 274 SMART efh_1 116 144 IPR002048 GO:0005509
Seca4g02578 274 SMART efh_1 79 107 IPR002048 GO:0005509
Seca4g02578 274 SMART efh_1 160 188 IPR002048 GO:0005509
Seca4g02578 274 CDD EFh 116 186 IPR002048 GO:0005509
Seca4g02578 274 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Seca4g02578 274 PANTHER CALCINEURIN B 1 214 IPR045198 GO:0005509|GO:0019722|GO:0019900
Seca4g02578 274 Pfam EF-hand domain pair 115 185 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02578 Seca-Chr4 44180071 44186930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02578 35 201 EF-hand Containing Proteins AT5G24270 80.240 3.97e-96 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02578 K06268 - gmx:100777818 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02578 4 44180071 44186930 Seca4g02578 4 44180071 44186930 ECH