Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02511 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGAACTCCACTAGGATTGAATACCAAGTTTTCTAGTCATCATCCTGCACTGAAGAGGCATTCAACTGTAGCATTTAAAGGAGATAAACCGAATGATTCAGCTTTGGTTGCAACCCAAGAGAAAATTCCTGTGGCCATTGAAACCGCCAAGACACAAAAGAAAAGGATAGGAAGAGCTAATAAACTACCTAAGAGAGTGAGAACTGTCTTTACTGAGGAAACGTCTCCATCTTCTTCAGAAGTGGACTACAATGAAGCTGCTGCCATACTTGAAAATATATACAAACTTAGCCCTGCATCTGATATTTGTAATCCAGAATATATAGATAGTACAATCAAAAGAGTCTCTCAGAGGGGAAAGAAGATTGGTAATGAAAGTAAAGTAAAAGAGTTAAACAACAATAGGGTGGTCAGAAACAAGAACAAGAAAGCCAAAAGATTGAGTCTTACTGAGAGGATTGCATTAAATAAGACCAAGAACGACGAGGTAGCCATTCCTACTCGGAAGAAAAGAAATGTTAAGAGCAGATTTGAGAAGATTGAGGAACTTGTGAGGGAATATTCAGCATCAACTGATCTTGCCAGTCTGGACTGGAAAAAAATGAGAATACCTGCAGTTCTTCCTTCTTCAGAACATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGCACTCCTTCAATTGAAAGAAGATTTACAGAAGGAGCAAGGGAGAGAACCTGCGGAGGGTGAAATAGCTGATGCAACAAACATGCATGTTGGTCAAGTAAAGAAAGTACTAGAGGTTGGTCGAGCTGCAAGAAACAAGCTCATAAAGCACAACCTCCGGCTTGTCTTGTTTGTGATCAACAAATATTTTCCAGATTTTGCTAGTGGCACAAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATAACTGCAATCGATCGTTTTGAACCAAACAGGAGATTTCGCCTATCTACATACAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCCATGACCCTCTCAAACTTCACACGCGTTCCCTTTGGACTAGAATCGGTTAGAGCAGAGATCCGAAGAGCTAAAACTGAGTTAACATTTGAGCTTCAGAGGCCACCAACAGAGGAAGAAATAGTAGAAAGACTTCAGATATCCCCTGAAAGATACCATGACGTGATAAAGGCATCAAAACCCCATCTTTCACTACACTCAAGACATATAACCACACAAGAAGAGTTTATTAATGGGATTGTTGATACTGATGGTGTTAATGGTGATAATAGCAGGCAACCTGCTCTACTAAGACTTGCTCTTGATGACGTGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGGCAGAGATTTGGACTTGATGGTAAGGGTGACAGAACATTGGGAGAAATAGCTGGGAACTTGAATATTTCTAGGGAAATGGTGAGAAAACACGAAGTTAAGGCTCTCATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGTCATGTTGTATAA 1548 0.4076 MGVVTVSSSAARTPLGLNTKFSSHHPALKRHSTVAFKGDKPNDSALVATQEKIPVAIETAKTQKKRIGRANKLPKRVRTVFTEETSPSSSEVDYNEAAAILENIYKLSPASDICNPEYIDSTIKRVSQRGKKIGNESKVKELNNNRVVRNKNKKAKRLSLTERIALNKTKNDEVAIPTRKKRNVKSRFEKIEELVREYSASTDLASLDWKKMRIPAVLPSSEHAWLFKLMQPMKALLQLKEDLQKEQGREPAEGEIADATNMHVGQVKKVLEVGRAARNKLIKHNLRLVLFVINKYFPDFASGTRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIRRAKTELTFELQRPPTEEEIVERLQISPERYHDVIKASKPHLSLHSRHITTQEEFINGIVDTDGVNGDNSRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRHVV. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02511 515 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 92 348 IPR013325 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 Gene3D RNA Polymerase Primary Sigma Factor 43 350 - -
Seca4g02511 515 Pfam Sigma-70 region 3 365 432 IPR007624 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 Pfam Sigma-70 region 3 236 276 IPR007624 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 Pfam Sigma-70, region 4 450 503 IPR007630 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 356 418 IPR013324 -
Seca4g02511 515 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 87 514 - -
Seca4g02511 515 PRINTS Major sigma-70 factor signature 454 466 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 PRINTS Major sigma-70 factor signature 332 340 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 PRINTS Major sigma-70 factor signature 475 490 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 PRINTS Major sigma-70 factor signature 490 501 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 PRINTS Major sigma-70 factor signature 308 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 Gene3D - 354 406 IPR036388 -
Seca4g02511 515 NCBIfam sigma-70 family RNA polymerase sigma factor 277 503 IPR014284 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 420 506 IPR013324 -
Seca4g02511 515 Pfam Sigma-70 region 2 281 347 IPR007627 GO:0003700|GO:0006352|GO:0006355
Seca4g02511 515 Gene3D - 438 515 IPR036388 -
Seca4g02511 515 Coils Coil 360 380 - -
Seca4g02511 515 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 230 275 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02511 Seca-Chr4 42928947 42933181 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02511 K03093 - gmx:100812580 781.171