Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02442 ATGGCTCTGGAGAACTGTTTACGAGTAACCACAGTAGGCACTGCCAGACCCCAATGCTTTTCAACTTCAAAGGAAAAGCTTGTTTTCCCAACTCACAGAGTATTCAAGAAATCATTGCTAAACAACTCAACAATATCATATCCATCTCTTTATTCAACCGGTGGTACCTACAGAAAATCACGTTTTATTTGCAATGCTAGTGAAGCAGTAAATGAAGTTCGAGTAGTGACTGACTCAAGCTGGAATAACCTGGTAATTGCAAGTGAAAGCCCTGTGCTGGTAGAGTTTTGGGCACCATGGTGTGGTCCGTGCAGGATGATAGCGCCTGTTATTGATGAGTTAGCAAAAGAATATGCTGGAAAAATTGCATGCTTCAAGCTTAACACAGATGATTCTCCAAACATAGCAACACAGTACGGCATCAGAAGCATACCAACAGTTCTGTTCTTTAAGAATGGAGAGAAAAAAGAAAGCATAATTGGTGCGGTTCCCAAGTCTACTTTGTCCGCAACAGTGGAAAAATATATTGATATTTGA 537 0.406 MALENCLRVTTVGTARPQCFSTSKEKLVFPTHRVFKKSLLNNSTISYPSLYSTGGTYRKSRFICNASEAVNEVRVVTDSSWNNLVIASESPVLVEFWAPWCGPCRMIAPVIDELAKEYAGKIACFKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATVEKYIDI. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02442 178 Pfam Thioredoxin 73 173 IPR013766 -
Seca4g02442 178 Gene3D Glutaredoxin 73 177 - -
Seca4g02442 178 ProSitePatterns Thioredoxin family active site. 93 111 IPR017937 -
Seca4g02442 178 CDD TRX_family 85 173 - -
Seca4g02442 178 FunFam Thioredoxin 67 176 - -
Seca4g02442 178 NCBIfam thioredoxin 77 175 IPR005746 GO:0015035
Seca4g02442 178 PANTHER GEO12009P1 67 176 - -
Seca4g02442 178 SUPERFAMILY Thioredoxin-like 61 177 IPR036249 -
Seca4g02442 178 ProSiteProfiles Thioredoxin domain profile. 39 177 IPR013766 -
Seca4g02442 178 PRINTS Thioredoxin family signature 92 100 - -
Seca4g02442 178 PRINTS Thioredoxin family signature 100 109 - -
Seca4g02442 178 PRINTS Thioredoxin family signature 140 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02442 Seca-Chr4 41811946 41813043 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02442 K03671 - gmx:100305596 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02442 4 41811946 41813043 Seca4g02442 4 41811946 41813043 ECH