Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02392 ATGTCTCTCCTAACCCCCACTGACTTGCAGCGAATTTTTGAGAAGCTGGATTTGAATGGTGATGGCTTTGTGAGCCTTGAAGAACTCAACTGGCTCCTCCAGAGGACAGGCAATTCCCAGTATAGTTTAGAAGAGCTGGAATCTCTCGTCGAAAAGAAGAGTCTCGATTTCAATGAGTTTTTGTTCTTTTACAACTCCATATCGAAGCAGAACAATGGGGAAAGCAGAGGGGGTGATGATAATGATGAGAAGGAGGAATTGGAGAGTGATCTTGTGAAGACGTTCAATGTGTTTGATTTGGATGGGGATGGATTCATTACCAGCCATGAGCTTGAGTGTGTATTGAAGAGACTTGGCTTGTGGGATGGCAAGGATTGCAGAAGCATGATTCAATTCTATGACACCAATTTGGATGGTCAGCTTGATTTCCAGGAATTCAAAAACATGATGTTACTTGCCATTGTGTGA 468 0.4295 MSLLTPTDLQRIFEKLDLNGDGFVSLEELNWLLQRTGNSQYSLEELESLVEKKSLDFNEFLFFYNSISKQNNGESRGGDDNDEKEELESDLVKTFNVFDLDGDGFITSHELECVLKRLGLWDGKDCRSMIQFYDTNLDGQLDFQEFKNMMLLAIV. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02392 155 SMART efh_1 125 153 IPR002048 GO:0005509
Seca4g02392 155 SMART efh_1 8 36 IPR002048 GO:0005509
Seca4g02392 155 SMART efh_1 90 118 IPR002048 GO:0005509
Seca4g02392 155 Pfam EF-hand domain pair 90 150 IPR002048 GO:0005509
Seca4g02392 155 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Seca4g02392 155 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 54 150 - -
Seca4g02392 155 Gene3D - 79 153 - -
Seca4g02392 155 Gene3D - 6 70 - -
Seca4g02392 155 SUPERFAMILY EF-hand 8 151 IPR011992 -
Seca4g02392 155 ProSiteProfiles EF-hand calcium-binding domain profile. 86 121 IPR002048 GO:0005509
Seca4g02392 155 ProSiteProfiles EF-hand calcium-binding domain profile. 124 155 IPR002048 GO:0005509
Seca4g02392 155 ProSitePatterns EF-hand calcium-binding domain. 99 111 IPR018247 -
Seca4g02392 155 Pfam EF hand 9 29 IPR002048 GO:0005509
Seca4g02392 155 CDD EFh 90 150 IPR002048 GO:0005509
Seca4g02392 155 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Seca4g02392 155 FunFam Probable calcium-binding protein CML44 5 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02392 Seca-Chr4 40702249 40702716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02392 2 151 EF-hand Containing Proteins AT1G21550 44.872 2.23e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02392 K13448 - gmx:100527117 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02392 4 40702249 40702716 Seca4g02392 4 40702249 40702716 ECH
Seca4g02392 4 40702249 40702716 Seca4g02392 4 40702249 40702716 PCT