Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02375 ATGGCCACGCTCTCATACACACCACCATTCTTCGCCCTTCAGGGAAACACTTCCAACGACGCCAATGCCTACCTCATTCGGCTACGCCCTTCTGTGCCTTACTTCCATCGCTTGCAACGACGTCGTTGCGCACCCGTATTTGTTGCCGTTGCGTCCGTGAAGGAAAATATCGGTCACATTAGAAAGAGTTTCAGTGACTTCACGAGCTTGAACTACTGGGTTGTTCGTGATTACTACCGTCTCGTCAACTCCGTTAATGCCTTCGAACCTCGAATTCAGAAGCTCTCCGATGAACAGTTGGCTGCGAAAACCAAGGAGTTTCGACTCCGGCTCACGCGCGGGGAGACACTTGCGGATATCCAAGCTGAGGCGTTCGCTGTCGTTCGTGAGGCTGCAAAAAGAAAACTTGGAATGCGCCATTTTGATGTCCAGATTATTGGTGGAGCAGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACGGGGGAGGGAAAAACCTTGGTTTCCACACTAGCAGCATATCTTAATGCCCTGACCGCTGAGGGTGTCCATGTTGTAACTGTCAATGATTATCTAGCTCAACGGGATGCTGAATGGATGGGGCGTGTTCACCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGGGGAATGGATGCTGAAGAAAGGAGATTCAACTATAGATGTGACATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGAGACAATCTTGCTGGAAATAGTGAACAGCTTGTGATGAGATGGCCAAAGCCGTTTCATTTTGCAATTGTTGATGAGGTGGACTCTGTCCTGATAGACGAGGGAAGAAATCCTTTGTTAATCAGTGGCGAGGCTAGTAAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTGGCCGAACTGCTTATTCAGGGCACTCATTACAAAGTTGAGCTTAAAGATAATTCGGTGGAGTTAACTGAAGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACAAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGGTTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGTCGAGATGTGCAATACATTGTCAGAGATGGGAAGGCTTTAATTATCAATGAGGCATGTGGCATGACACGGAGACCCATCTAA 1167 0.4653 MATLSYTPPFFALQGNTSNDANAYLIRLRPSVPYFHRLQRRRCAPVFVAVASVKENIGHIRKSFSDFTSLNYWVVRDYYRLVNSVNAFEPRIQKLSDEQLAAKTKEFRLRLTRGETLADIQAEAFAVVREAAKRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMDAEERRFNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIQGTHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINEACGMTRRPI. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02375 388 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 48 382 IPR000185 GO:0005524|GO:0006605|GO:0006886
Seca4g02375 388 SUPERFAMILY Pre-protein crosslinking domain of SecA 287 382 IPR036670 GO:0016020|GO:0017038
Seca4g02375 388 Pfam SecA preprotein cross-linking domain 295 382 IPR011130 GO:0016020|GO:0017038
Seca4g02375 388 ProSiteProfiles SecA family profile. 60 388 IPR014018 -
Seca4g02375 388 Gene3D - 76 288 IPR027417 -
Seca4g02375 388 SMART SecA_PP_bind_2 288 382 IPR011130 GO:0016020|GO:0017038
Seca4g02375 388 Gene3D - 289 383 - -
Seca4g02375 388 SMART SecA_DEAD_2 63 385 IPR011115 GO:0005524|GO:0016020|GO:0017038
Seca4g02375 388 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 309 IPR014001 -
Seca4g02375 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 296 IPR027417 -
Seca4g02375 388 PRINTS SecA protein signature 158 172 IPR000185 GO:0005524|GO:0006605|GO:0006886
Seca4g02375 388 PRINTS SecA protein signature 120 144 IPR000185 GO:0005524|GO:0006605|GO:0006886
Seca4g02375 388 PRINTS SecA protein signature 227 247 IPR000185 GO:0005524|GO:0006605|GO:0006886
Seca4g02375 388 PRINTS SecA protein signature 174 184 IPR000185 GO:0005524|GO:0006605|GO:0006886
Seca4g02375 388 CDD DEXDc_SecA 99 287 - -
Seca4g02375 388 Pfam SecA DEAD-like domain 74 294 IPR011115 GO:0005524|GO:0016020|GO:0017038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02375 Seca-Chr4 40311163 40314026 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02375 K03070 - cit:102621270 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02375 4 40311163 40314026 Seca4g02375 4 40311163 40314026 ECH