Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02372 ATGTGCAGCACAAGTGAACCAATTCATGAGGTTGCAGATGTAACAGAAACAGTGTGCAAGGTTATGATGTCTACTCCTACGGTGACACTTGACACTGCTCTTGATCAAACTGGGGTTAGGGTTTCTCCTGAATTGGTGGAGAACATCCTCAAGAGGTTTGAGAATGCGGGTATGTCTGCATTTCGGTTCTTTGAATGGGCAGAGAAGCAGCGAAATTACACACACACCATCAGGGCATACCACTTGATGATTGAGTCTTTGGCTAAGATTAGGCAGTATCAGATCATGTGGGACCTTGTCAATGCAATGAGGAAGAAGGGTATGCTAAATGTTGAGACTTTTTGTATCATTATGCGAAAATATGCTAGGGCTCATAAGGTAGATGAGGCTGTTTACACGTTTAATGTCATGGATAAATATGATGTACCACAAAATCTTGTTGGGTTTAATGGTTTGCTGAGTGCTTTATGCAAGTCCAAGAATGTGAGGAAGGCTCAAGAGATCTTTGACAGTATGAAGGGTAGGTTTGTTCCGGACTCGAAAACTTATAGCATATTGCTTGAGGGGTGGGGAAAGGCTCCAAATCTTCCCAAAGCAAGAGAGGTTTTCAGAGAGATGGTTTCTGTGGGATGCAGCCCTGATATTGTTACTTATGGTATAATGGTTGACATTCTTTGTAAAGCTGGGAGAGTTGATGAAGCTGTTGAGGTTGTCAAGGATATGGATGCTAGTAATTGCAGGCCAACATCTTTTATTTACAGTGTCCTGGTTCATACTTATGGAGTGGAAGACCGGATTGAAGATGCAATTGATACATTCCTGGAGATGGAAAGGAAGGGGATCAAGGCAGATGTTGTAGTGTATAATGCCTTGATTGGTGCTTTTTGTAAAGTAAACAAATTTAAAAATGTGCATAGGGTCTTGAAAGAGATGGAATGCAATGGCATCACTCCTAATTCACGGACCTGTAATGTTATCATAAGCAGTTTGATTACCCAGGGACAGACAGATAGAGCTTTTGGAGTCTTCCGCCGCATGATAAAGTCATGCGAACCGGATGCTGATACTTACACAATGATGATAAAAATGTTTTGTGAGAGAAATGAAGTGGAGATGGCTCTGAAAATATGGAGGTATATGAAGTCAAAAAAGTTTGTCCCAAGCATGCACACCTTTTCAGCTCTTATCAATGGGTTGTGTGAAAAGGGCAATGTTATGAAAGCTTGTGTTTTGCTAGAAGAGATGATAGAGAAGGGGATTAGACCATCACGTGTTACATTTGGGAGGTTAAGACAATTGCTTATAAAGGAAGGGAGAGAGGATGTGCTCAAATTTCTGCATGAGAAAATAAATCTTCTTGTTAAGGAGCCTTTGTGTGATTAA 1383 0.4093 MCSTSEPIHEVADVTETVCKVMMSTPTVTLDTALDQTGVRVSPELVENILKRFENAGMSAFRFFEWAEKQRNYTHTIRAYHLMIESLAKIRQYQIMWDLVNAMRKKGMLNVETFCIIMRKYARAHKVDEAVYTFNVMDKYDVPQNLVGFNGLLSALCKSKNVRKAQEIFDSMKGRFVPDSKTYSILLEGWGKAPNLPKAREVFREMVSVGCSPDIVTYGIMVDILCKAGRVDEAVEVVKDMDASNCRPTSFIYSVLVHTYGVEDRIEDAIDTFLEMERKGIKADVVVYNALIGAFCKVNKFKNVHRVLKEMECNGITPNSRTCNVIISSLITQGQTDRAFGVFRRMIKSCEPDADTYTMMIKMFCERNEVEMALKIWRYMKSKKFVPSMHTFSALINGLCEKGNVMKACVLLEEMIEKGIRPSRVTFGRLRQLLIKEGREDVLKFLHEKINLLVKEPLCD. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02372 460 Pfam PPR repeat 210 241 IPR002885 -
Seca4g02372 460 Pfam PPR repeat family 284 330 IPR002885 -
Seca4g02372 460 Pfam PPR repeat family 145 189 IPR002885 -
Seca4g02372 460 Pfam PPR repeat family 352 400 IPR002885 -
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Seca4g02372 460 Gene3D Tetratricopeptide repeat domain 27 173 IPR011990 GO:0005515
Seca4g02372 460 Pfam PPR repeat 252 281 IPR002885 -
Seca4g02372 460 Pfam PPR repeat 113 140 IPR002885 -
Seca4g02372 460 SUPERFAMILY TPR-like 77 417 IPR011990 GO:0005515
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Seca4g02372 460 PANTHER OS03G0856100 PROTEIN 35 348 - -
Seca4g02372 460 Gene3D Tetratricopeptide repeat domain 382 451 IPR011990 GO:0005515
Seca4g02372 460 Gene3D Tetratricopeptide repeat domain 313 381 IPR011990 GO:0005515
Seca4g02372 460 Gene3D Tetratricopeptide repeat domain 243 312 IPR011990 GO:0005515
Seca4g02372 460 Gene3D Tetratricopeptide repeat domain 174 242 IPR011990 GO:0005515
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 175 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 149 175 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 322 352 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 286 319 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 182 215 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 113 143 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 356 388 IPR002885 -
Seca4g02372 460 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Seca4g02372 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02372 Seca-Chr4 40284206 40285588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02372 83 448 Glycosyltransferase AT1G05670 24.356 2.22e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02372 - - gmx:100790096 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02372 4 40284206 40285588 Seca4g02372 4 40284206 40285588 ECH