Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02364 ATGTGGTGCCAATCCATCATGTCATCGTCCATATCTGTCAATTTTTATCTGGATATTTCTCGGCCCAATAGTTACCAATTTTTATCCATCACAAAAATGTGGAAACCAAATCAAGTTTGCGTGATGAGCTTCTTGAGGCCTTCTGCATTGTACCAGTTTCTGATCAGTTATCCTTCCCTGCGATGGATGCCGTGTCAGAGTTGGGGGTTCCTTCGATGGCCGGGTCTTGACGGGTTCTCGAGGCTTTTGGTGATTGTGCTTCTCTGGTCTACCTTCTCCGAGCTTCGCTACATACCCTCTTCTTCTATGTACCCTACCCTTCGTGTTGGCGATCGAATTATTGTCGAAAAGGCTTCATATTATGTCAGGAGTCCTGCTATACATGATATTGTAACATTTCGAGATCCAACACAGCTTTCTGGAGACAACACGGATGTTGTTTTTATTAAGAGAGTTGTTGCAAAAGCAGGAGACACTGTTGAGATTCATCAAGGGGGTCTCTATGTTAATGGCATTGCTCAGAAGGAAGATTTTGTATTACAGCCTCCAACATACACATTGAATTTAACTGTCCAGTTCATTTTTAATTCTAATGAATTCTATCCTTATTTGTTTGTTCTATATTCATTCATATTTTTCTTTTCCTCATATTACTTCTTATCCTTACAGTATGTGCCCGAAGGCCATGTTTATGTGTTGGGGGATAATCGTAACAATAGCTATGATTCCCATGTATGGGGACCACTTCCTGTTAAAAACATAGTTGGCAGATATGTTATGTGCTGTCACAGACCAACAAATTGA 804 0.4055 MWCQSIMSSSISVNFYLDISRPNSYQFLSITKMWKPNQVCVMSFLRPSALYQFLISYPSLRWMPCQSWGFLRWPGLDGFSRLLVIVLLWSTFSELRYIPSSSMYPTLRVGDRIIVEKASYYVRSPAIHDIVTFRDPTQLSGDNTDVVFIKRVVAKAGDTVEIHQGGLYVNGIAQKEDFVLQPPTYTLNLTVQFIFNSNEFYPYLFVLYSFIFFFSSYYFLSLQYVPEGHVYVLGDNRNNSYDSHVWGPLPVKNIVGRYVMCCHRPTN. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02364 267 NCBIfam signal peptidase I 82 261 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca4g02364 267 ProSitePatterns Signal peptidases I serine active site. 100 107 IPR019756 GO:0004252|GO:0016020
Seca4g02364 267 Pfam Signal peptidase, peptidase S26 82 260 IPR019533 GO:0004252|GO:0006465
Seca4g02364 267 Gene3D Umud Fragment, subunit A 100 265 - -
Seca4g02364 267 FunFam Peptidase/ serine-type peptidase 100 199 - -
Seca4g02364 267 PRINTS Bacterial leader peptidase 1 (S26A) family signature 225 244 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca4g02364 267 PRINTS Bacterial leader peptidase 1 (S26A) family signature 91 107 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca4g02364 267 PRINTS Bacterial leader peptidase 1 (S26A) family signature 148 160 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca4g02364 267 SUPERFAMILY LexA/Signal peptidase 92 260 IPR036286 -
Seca4g02364 267 ProSitePatterns Signal peptidases I signature 3. 230 243 IPR019758 GO:0004252|GO:0016020
Seca4g02364 267 CDD S26_SPase_I 94 257 IPR019533 GO:0004252|GO:0006465
Seca4g02364 267 PANTHER SIGNAL PEPTIDASE I 79 263 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02364 Seca-Chr4 40194999 40200663 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02364 K03100 - gmx:100306121 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02364 4 40194999 40200663 Seca4g02364 4 40194999 40200663 ECH