Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02348 ATGCCAGCTTCTTCCCCTTCAGAAAACCGAACCAAATGGAGGAAGCGCAAGAGAGACTCCCAAATCAGCCGGCGTCAACAGAAGCACGAGGAGGAAGAAGACGAGGACGAAGAAAACCCCAATGCGGAGGAAGACCAGTACGATTCGGAGGACCAAACGCACCAGAACCACCCTAATTCACAAGCGCATCAAGAGATGGAGGTTCTCTCCGATCATGGGGTTCAGATTTCACAGTTCCCCATAGTGATAAAGCGCGCCGTCAATAGACCCCACTCTTCTGTCACCGCAATCGTCGCTCATGAACGAGCCATGGAGTTGGGAGATAACAAGGGTCAGCTTCAGAATCCTCCATTTCTGGAGAATGTGTCTCATGGGCAGCTTCAGGCTCTCTCTACCGTGCCCTCTGATAACCCCGCTTTCGATCACGAACGCACTGATTCCTCTTATGTTATCACTCCACCCTCCATTTTGGAAGGCCGTGGCGTTGTTAAGCGCTTTGGAAATAGGACTCTTGTGCTCCCTATGCATTCAGATTGGTTTTCGCCAGCCACAGTGCATCGACTAGAGAGGCAGGCAGTGCCTCATTTCTTTTCTGGAAAATCGCCAGATCATACTCCAGAGAAGTACATGGAATGTAGGAACTACATTGTTGCACTACACATGGAGGACCCGGGGAAGAGGATTACTGTCTCTGATTGCCAGGGATTGTTGGTTGGGATGGATCATGAAGATTTAACTCGAATTATTCGCTTCCTTGATCACTGGGGAATTATCAATTACTGTGCTCGGGTGCCAAGCCATGAGCCTCTGGATACTGCATCCTGCCTGAAGGAGGACACAGGTGGAGAGATCCGTGTGCCGTCGGAGGCTTTGAAATCCATTGATAGTTTGATCAAATTTGAGAAGCCCAAGTGTAAGCTCAAAGCAGAAGAAATTTATTCATCATTGACAACCCATAATGCTGACATACCTGATCTTGACGACAGAATAAGAGAGCATCTGTCTGAAAATCATTGCAATTATTGCTCTCGTCCGCTTCCGGTTGTATACTATCAGTCTCAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTGTAAGGGTGGATTCAACAAGAGATTATGGTGAAATAGATGGGGATAGTTGGACTGATCAAGAAACTTTGTTGCTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGACGGAAAATTGGAAAATATCAATGTTCCAAGCATGTCTTTGTCATCCAATGTGATGAATAGAGATGATAATGGAAGATTGCATCATCACTTAAATGGAGATTCTGCAGGACATGTCCATCAAATCAGAGATTCTGACAGCCGGCTACCTTTTGCAAATTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCCTCTGCGATTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGAGGATAATTCTGGCAGCACATCGCAGACAGAAGCCCCAGGACATGATAATAGGACAAATCCCGAAAACATACATTGTAGAGACGGTGGCCCTCGTGGAGAAACTGCAATTTCAAATAATCATAATGAGGATAAGGCAAAAGTACTTGGGGGTCAAAGTGATGGTAGGACAACCCCACTCTCTGCTGAGAAAGTTAAAGATGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGGTTATGTGCTAATATAATTAATCATCAGTTGAAGAGATTGGAATTGAAGCTCAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAAGAATGCGAACAAGTGGAGAGGGCAAAGCAGAGGTTTGTTGCTGAACGGTCCCGCATTATATCAGCACGTTTTGGAACTGCAGGAACCACTCCTCCAATGAATGCATCAGGTGTTGGTCCTTCAATGGCTAGTAATAATAACGGCAACAATAGGCCGCAAATGATCTCTGCTTCTCCCTCACAGCCGAGCATCTCAGGGTATGGCAACAACCAACCAGTTCATCCACACATGTCCTTTGCCCCACGACCTTCAATGTTTGGGTTGGGGCAAAGATTACCCCTATCTATGATACAGCAATCACAATCAACTTCTTCAACCGCCATGTTCAATGCCCCTAGTAATGTGCAGTCCACTACCAGTCATCCAATGTTGAGGCCTGTGTCAGGAACTAACTCAGGTTTAGGTTAA 2355 0.451 MPASSPSENRTKWRKRKRDSQISRRQQKHEEEEDEDEENPNAEEDQYDSEDQTHQNHPNSQAHQEMEVLSDHGVQISQFPIVIKRAVNRPHSSVTAIVAHERAMELGDNKGQLQNPPFLENVSHGQLQALSTVPSDNPAFDHERTDSSYVITPPSILEGRGVVKRFGNRTLVLPMHSDWFSPATVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVALHMEDPGKRITVSDCQGLLVGMDHEDLTRIIRFLDHWGIINYCARVPSHEPLDTASCLKEDTGGEIRVPSEALKSIDSLIKFEKPKCKLKAEEIYSSLTTHNADIPDLDDRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFVRVDSTRDYGEIDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSNVMNRDDNGRLHHHLNGDSAGHVHQIRDSDSRLPFANSGNPVMALVAFLASAIGPRVAASCAHAALAVLSEDNSGSTSQTEAPGHDNRTNPENIHCRDGGPRGETAISNNHNEDKAKVLGGQSDGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFVAERSRIISARFGTAGTTPPMNASGVGPSMASNNNGNNRPQMISASPSQPSISGYGNNQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSTSSTAMFNAPSNVQSTTSHPMLRPVSGTNSGLG. 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02348 784 ProSiteProfiles SANT domain profile. 392 443 IPR017884 -
Seca4g02348 784 FunFam SWI/SNF complex subunit SMARCC2 isoform c 177 265 - -
Seca4g02348 784 SUPERFAMILY Homeodomain-like 394 447 IPR009057 -
Seca4g02348 784 Pfam Myb-like DNA-binding domain 396 438 IPR001005 -
Seca4g02348 784 Gene3D - 393 443 - -
Seca4g02348 784 ProSiteProfiles Zinc finger ZZ-type profile. 334 388 IPR000433 GO:0008270
Seca4g02348 784 MobiDBLite consensus disorder prediction 1 64 - -
Seca4g02348 784 ProSiteProfiles SWIRM domain profile. 171 269 IPR007526 GO:0005515
Seca4g02348 784 Gene3D - 177 264 IPR036388 -
Seca4g02348 784 FunFam SWI/SNF complex subunit SMARCC2 isoform C 393 443 - -
Seca4g02348 784 Pfam SWIRM domain 174 260 IPR007526 GO:0005515
Seca4g02348 784 CDD SANT 396 438 IPR001005 -
Seca4g02348 784 MobiDBLite consensus disorder prediction 527 544 - -
Seca4g02348 784 MobiDBLite consensus disorder prediction 746 784 - -
Seca4g02348 784 MobiDBLite consensus disorder prediction 527 586 - -
Seca4g02348 784 ProSiteProfiles Myb-like domain profile. 396 439 IPR001005 -
Seca4g02348 784 SMART sant 393 441 IPR001005 -
Seca4g02348 784 PANTHER SWI/SNF COMPLEX-RELATED 60 672 - -
Seca4g02348 784 Pfam SWIRM-associated region 1 598 674 IPR032451 -
Seca4g02348 784 SUPERFAMILY Homeodomain-like 170 262 IPR009057 -
Seca4g02348 784 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02348 Seca-Chr4 40012723 40021795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02348 339 435 EF-hand Containing Proteins AT3G07740 33.962 1.97e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02348 K11649 - gmx:100780440 1311.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02348 4 40012723 40021795 Seca4g02348 4 40012723 40021795 ECH