Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02347 ATGAATTCATTGAATTTGAGGGTGAGAGTGAGACCCGTCCAGGTGCCTATGATGAAGAGAAAAAGATCCTCAAAACCATTGCCTCCCCCTCCCTCAACGCCTCCAACCCTAGAAATCCAAATACGCCACTCTACAAACAACACAAATGCCTTTGACTGGGTCCCTTTGAATGTTAACCGTAAACAGCTCTCTTTACCCCTCACCTTCCCTACTGGCCAAACCTTCCGCTGGAAAAACACCGGACCCTTGCAGTACACAGGTGTTGTTGGGTCCCACCTCCTATCCCTCAAGCACCTCCAAAACGGTGACGTTTGCTACTGTCTTCACTCCCACACAGATTCCCACGCTGATGCAAGAACGGCCTTACTTGATTTTCTGAATGCTGACATTTGTCTATCAGACATGTGGAAGGACTTCTCAGATTCTGATGCCAGGTTTGCTGAGCTGGCATGCCATTTGGGCGGTGCCCGAGTGCTCAGGCAAGACCCTTTTGAATGCTTGATTCAGTTTCTTTGTTCTTCAAATAACAACATTGGCAGAATTACTAAAATGGTGGATTTTGTTTCATCACTTGGGAATTACTTGGGTCAAGTTGAAGACTTTCACTTCCATGAGTTCCCCACTTTGGACCAGCTTTCCTTGGTCTCAGAGCAACAGCTTAGAAATGCTGGTTTTGGTTACAGGGCTAAATATATAATTGGCACTGTGAATGCTTTGCAATCAAAACCAGGTGGAGGGGAAGAATGGCTTCACTCTCTTCGTAAGCTGGATCTTCAAGATGTTATAGGTGCACTTTCTACATTACCTGGAGTGGGTCCTAAAGTTGCTGCTTGCATAGCTCTCTTCTCACTTGATCAACACCATGCCATTCCTGTTGACACTCATGTGTGGCGGATTGCCAAAAACTATCTCTTACCTGAGCTTGCAGGTTCCCAGTTGACACCAAAGCTCTGCAATCGTGTTGCAGAGGCATTTGAAACTAAATATGGTAAATATGCTGGCTGGGCTCAAACTCTTCTATTCATAGCTGAGTTACCTTCACAAAAGGCCCTCCTACCTTCACATTTATGGACTACCAAACAGCACAATCCTGCAAAGATAGAGGCCAGTGAAGAAGATGTTGGTAAGAAAAAGCAACTGTAG 1143 0.4549 MNSLNLRVRVRPVQVPMMKRKRSSKPLPPPPSTPPTLEIQIRHSTNNTNAFDWVPLNVNRKQLSLPLTFPTGQTFRWKNTGPLQYTGVVGSHLLSLKHLQNGDVCYCLHSHTDSHADARTALLDFLNADICLSDMWKDFSDSDARFAELACHLGGARVLRQDPFECLIQFLCSSNNNIGRITKMVDFVSSLGNYLGQVEDFHFHEFPTLDQLSLVSEQQLRNAGFGYRAKYIIGTVNALQSKPGGGEEWLHSLRKLDLQDVIGALSTLPGVGPKVAACIALFSLDQHHAIPVDTHVWRIAKNYLLPELAGSQLTPKLCNRVAEAFETKYGKYAGWAQTLLFIAELPSQKALLPSHLWTTKQHNPAKIEASEEDVGKKKQL. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02347 380 SMART endo3end 172 338 IPR003265 GO:0006284
Seca4g02347 380 Pfam HhH-GPD superfamily base excision DNA repair protein 168 303 IPR003265 GO:0006284
Seca4g02347 380 SUPERFAMILY TATA-box binding protein-like 47 161 - -
Seca4g02347 380 Gene3D - 135 345 IPR023170 -
Seca4g02347 380 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 56 167 IPR012904 GO:0003684|GO:0006289|GO:0008534
Seca4g02347 380 MobiDBLite consensus disorder prediction 14 35 - -
Seca4g02347 380 SUPERFAMILY DNA-glycosylase 162 343 IPR011257 GO:0003824|GO:0006281
Seca4g02347 380 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 37 363 - -
Seca4g02347 380 FunFam N-glycosylase/DNA lyase OGG1 283 345 - -
Seca4g02347 380 CDD ENDO3c 164 342 IPR003265 GO:0006284
Seca4g02347 380 FunFam N-glycosylase/DNA lyase 162 286 - -
Seca4g02347 380 Gene3D Hypothetical protein; domain 2 162 286 - -
Seca4g02347 380 Gene3D - 40 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02347 Seca-Chr4 40005520 40008062 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02347 K03660 - gmx:100789749 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02347 4 40005520 40008062 Seca4g02347 4 40005520 40008062 ECH