Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02338 ATGAAAATCCGCAACTCTTCCTTTTCCTCAGCGATCATATTCTTGTTTATCGCTCTGAAGCTCGTGGTTTCCCTCGCCGCAGATATACCTTCCACCGCTTACGACCGCGTTTTGTTCCCCGACCGGAGATGCTACGATCGGGAGAAAACGGTCTCGCCGTGCAAAAATACGACGCGGCTAGGGACGACGGCAGCGACGAACTGCGAGGTGTGGAGTAAGGCGTGCTCGGAGGCGGTGATGAGCGTAGCACGGCTGCCGGAGACGGCGAAGTGGTTGAAAAACGTTCGGAGGAAGATCCACGAGAATCCAGAGCTGGCTTTTGAGGAAACCGAGACTAGCCGTTTGATTCGAGAGGAGTTGGATCTGATGGAAGTTAGTTATCGGTACCCTCTCGCAAAGACCGGTATTCGAGCCTGGATCGGCACAGGGGGTCCGCCTTTTGTTGCAATTAGAGCTGACATGGATGCACTTCCTATCCAGGAAGCTGTGGAATGGGAGTACAAGTCTAAAGTTGCCGGCAAAATGCACGCTTGTGGGCACGACGCACATGTGGCGATGCTTATTGGTGCTGCCAAGATCTTAAAAACTCGAGAGCATTTATTAAAGGTTAGTTCTTCCCCAATTCTCTCTGGAAATCGTACTTCTAATCTATCACAGGGAACTGTAATTCTGTTATTCCAGCCAGCAGAGGAAGCTGGTAATGGAGCAAAGCGAATGATGCAAGACGGTGCTTTGGAGGACGTGGAGGCTATATTTGCAGTTCATGTATCTCATGAACATCCAACTGCTATAATTGGGTCGAGGCCTGGACCCTTGCTGGCTGGCTGTGGTTTTTTCAGAGCTGTGATTAGTGGGAAAAGAGCCCTCGCTGGCAATCCTCACCACTCTGTTGATCCTGTTTTGGCCGCTTCAGCTGCAGTTATCAGCTTACAGGGTATTGTCTCTCGAGAGTCAAATCCGTTGGATTCACAGGTTGTCTCTGTCACTTCGTTTAATGGAGGCAACAACCTTGACATGATACCGGACACAGTCGTCATTGGTGGGACTTTCAGAGCATTCTCTAATACCAGCTTTTACCAGCTACTTGAAAGAATAGAGCAGGTGATTGTGGAACAGGCCAGTGTCTACAGATGCTCAGCAGAAGTTGATTTCTTTGAAAAGGAGTACACTATTTATCCTCCAACAGTCAATGATGACCGAATGTATGAGCATGTGAAGAAGGTGTCCATCGATTTGCTGGGCCAAACGAATTTCAAGGTAGTCCCACCTATGATGGGTGCTGAAGATTTCTCTTTTTACTCCCAGGTGGTTCCATCAGCTTTCTTCTACATAGGGATAAGGAATGAAACACTAGGGTCTACTCACACTGGACATTCTCCATATTTCATGATTGATGAAGACGTTCTACCAATAGGCGCTGCTGTTCATGCCACCATTGCAGAGAGGTACCTCATTGAACATAGCTGA 1467 0.484 MKIRNSSFSSAIIFLFIALKLVVSLAADIPSTAYDRVLFPDRRCYDREKTVSPCKNTTRLGTTAATNCEVWSKACSEAVMSVARLPETAKWLKNVRRKIHENPELAFEETETSRLIREELDLMEVSYRYPLAKTGIRAWIGTGGPPFVAIRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKTREHLLKVSSSPILSGNRTSNLSQGTVILLFQPAEEAGNGAKRMMQDGALEDVEAIFAVHVSHEHPTAIIGSRPGPLLAGCGFFRAVISGKRALAGNPHHSVDPVLAASAAVISLQGIVSRESNPLDSQVVSVTSFNGGNNLDMIPDTVVIGGTFRAFSNTSFYQLLERIEQVIVEQASVYRCSAEVDFFEKEYTIYPPTVNDDRMYEHVKKVSIDLLGQTNFKVVPPMMGAEDFSFYSQVVPSAFFYIGIRNETLGSTHTGHSPYFMIDEDVLPIGAAVHATIAERYLIEHS. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02338 488 SUPERFAMILY Bacterial exopeptidase dimerisation domain 275 384 IPR036264 -
Seca4g02338 488 Pfam Peptidase family M20/M25/M40 149 481 IPR002933 GO:0016787
Seca4g02338 488 NCBIfam amidohydrolase 94 472 IPR017439 GO:0016787
Seca4g02338 488 CDD M20_IAA_Hyd 92 484 IPR044757 GO:0009850|GO:0016787
Seca4g02338 488 Gene3D Zn peptidases 94 477 - -
Seca4g02338 488 SUPERFAMILY Zn-dependent exopeptidases 85 486 - -
Seca4g02338 488 Gene3D - 274 393 - -
Seca4g02338 488 FunFam N-acetyldiaminopimelate deacetylase 274 392 - -
Seca4g02338 488 Pfam Peptidase dimerisation domain 279 373 IPR011650 -
Seca4g02338 488 PANTHER PEPTIDASE M20 FAMILY MEMBER 72 487 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02338 Seca-Chr4 39832185 39841574 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02338 K21604 - gmx:100800794 788.104