Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02332 ATGAGGTTCGGCCACGTAAGAGGAAGTGCCCACGTGGGAAGAGTAGATTCGTTATTCCGTATCGGAGTGAGTAGGAACTACACAGAAAGTCCAAAATATCTCAGAAACTATCGCTCACGTGTCTTTCGCAATGTTTTTAGCGTTTTCAATTCTACTCTCACACACCCTACCCTACAAAAGGCCACCTCCTCTTCCAAGCCTAAAATCTCAAAGCTCTTTTTTTTCAGAGGCACGATGGCGAAAAGGGTTTCGATTTCGTTCCTCTTCGTGTTCGCTATCTCTCTCCTTGTTTCTCTCCCCACTCAGATCTACGCTGATGAATCGGAGGCCAAGGAATTCGTGCTCACATTGGATCACTCCAACTTCTCCGACACTATCAGCAAGCACAATTTCATCGTCGTCGAGTTCTACGCGCCTTGGTGTGGCCACTGCAAGAAGCTTGCTCCTGAGTATGAAAAGGCTGCTTCTGTCTTGAGTAGTCATGATCCTCCGATTGTTTTGGCTAAAGTTGATGCTAATGAGGAGAAGAACAGAGACCTTGCATCAGAATATGAAGTTAGGGGATTCCCAACTATTAAGATTCTGAGAAGTGGTGGGAAAAACGTTCAAGAATACAAAGGTCCTCGTGAGGCAGATGGTATTGTAGACTATTTGAAGAAGCAAAGTGGTCCTGCATCAACTGAGATTAAATCTGTTGATGATGCTAGTACTTTTATTGGTGAAAATAAAGTTGTTATTGTTGGAGTTTTCCCAAAATTTTCTGGGGAGGAGTTTGAAAACTTTACTGCATTAGCAGAGAAGTTGCGTTCTGACTATGACTTTGGTCACACTCTGGATGCTAAACACCTTCCACGGGGAGAATCATCAGTGACCGGGCCCTTAGTTAGGTTATTCAAGCCTTTTGATGAGCTTTTTGTTGACTTCCAGGATTTCCATGTGGAAGCTCTAGAGAAATTTGTTGAAGAATCTAGTCTCCCTGTTGTGACTGTCTTTAACAATGATCCCAGCAATCACCCTTATGTTGTCAAATTCTTTAACAGTCCCCATGCAAAGGTAATATGCTATCTAAGTCAGTTTTGTTCCATCAATATTAAACTGGTGGATTTGTCTTTATCATACTGTTTTAGCAGCATTTTATATTTGTTACTGAGACTGACCTTCTGTTAG 1167 0.4225 MRFGHVRGSAHVGRVDSLFRIGVSRNYTESPKYLRNYRSRVFRNVFSVFNSTLTHPTLQKATSSSKPKISKLFFFRGTMAKRVSISFLFVFAISLLVSLPTQIYADESEAKEFVLTLDHSNFSDTISKHNFIVVEFYAPWCGHCKKLAPEYEKAASVLSSHDPPIVLAKVDANEEKNRDLASEYEVRGFPTIKILRSGGKNVQEYKGPREADGIVDYLKKQSGPASTEIKSVDDASTFIGENKVVIVGVFPKFSGEEFENFTALAEKLRSDYDFGHTLDAKHLPRGESSVTGPLVRLFKPFDELFVDFQDFHVEALEKFVEESSLPVVTVFNNDPSNHPYVVKFFNSPHAKVICYLSQFCSINIKLVDLSLSYCFSSILYLLLRLTFC. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02332 388 CDD PDI_a_family 115 218 - -
Seca4g02332 388 PRINTS Thioredoxin family signature 140 149 - -
Seca4g02332 388 PRINTS Thioredoxin family signature 185 196 - -
Seca4g02332 388 PRINTS Thioredoxin family signature 132 140 - -
Seca4g02332 388 Pfam Thioredoxin-like domain 250 333 - -
Seca4g02332 388 NCBIfam protein disulfide-isomerase domain 118 221 IPR005788 GO:0003756
Seca4g02332 388 ProSiteProfiles Thioredoxin domain profile. 93 223 IPR013766 -
Seca4g02332 388 Pfam Thioredoxin 114 220 IPR013766 -
Seca4g02332 388 Gene3D Glutaredoxin 102 222 - -
Seca4g02332 388 SUPERFAMILY Thioredoxin-like 114 224 IPR036249 -
Seca4g02332 388 SUPERFAMILY Thioredoxin-like 227 326 IPR036249 -
Seca4g02332 388 PANTHER PROTEIN DISULFIDE ISOMERASE 89 349 - -
Seca4g02332 388 FunFam Protein disulfide-isomerase 222 325 - -
Seca4g02332 388 CDD PDI_b_family 226 322 - -
Seca4g02332 388 ProSitePatterns Thioredoxin family active site. 133 151 IPR017937 -
Seca4g02332 388 Gene3D Glutaredoxin 223 329 - -
Seca4g02332 388 FunFam Protein disulfide-isomerase 103 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02332 Seca-Chr4 39758076 39760106 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02332 K09580 - gmx:100170705 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02332 4 39758076 39760106 Seca4g02332 4 39758076 39760106 ECH