Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02309 ATGGCTCAAACCATGTTGCTCATGTCTAGTGTATCTAGTAGCTATTCCGTGGATTTGAAGAAAGATCCTTTGCTCCAATTACAGAGTCAAAGATTAAGGCCTAAGTTCGCTCATCTCTCATTCAACCCATTTCCTTCAAATTCCTTGTTTTTTTCATCCCGTTCATTTACAACTCTGGCTCTCTTCAAATCAAAGACCAAAGCCCCTCCCAAGGTTGTAAAGCCAAAGCCAAAGGTTGAAGATGGTATCTTTGGTACTTCTGGAGGGTTTGGTTTTACTAAGCAGAACGAGCTCTTTGTGGGTCGTGTTGCTATGCTTGGTTTTGCAGCATCAATTTTGGGTGAAGCTATTACTGGCAAGGGAATTCTAGCACAATTGAATCTGGAAACAGGAATTCCCATTTATGAAGCAGAGCCACTTCTCCTATTTTTCATCCTTTTCACCCTGCTAGGAGCCATTGGAGCTCTAGGTGACCGTGGTAAATTTGTTGACGATGAACCTGCTTCTGGGCTGGATAAGGCTGTTATTCCTCCAGGCAAAGGTTTCAGAGGAGCTCTTGGTCTCAGTGAAGGAGGTCCTTTATTTGGATTCACCAAAGCCAACGAGCTGTTTGTTGGAAGATTGGCTCAATTGGGATTCGCTTTCTCTTTGATTGGAGAAATTATTACAGGGAAAGGAGCTCTAGCTCAGCTCAACATTGAGACTGGGGTACCAATTAATGAAATAGAACCGCTAGTGTTGTTTAATGTAGCTTTCTTCTTCATTGCTGCTTTGAATCCTGGAACTGGTAAATTTGTTACAGATGAGGAGGAAGATTAG 819 0.4249 MAQTMLLMSSVSSSYSVDLKKDPLLQLQSQRLRPKFAHLSFNPFPSNSLFFSSRSFTTLALFKSKTKAPPKVVKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAASILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDEPASGLDKAVIPPGKGFRGALGLSEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLFNVAFFFIAALNPGTGKFVTDEEED. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02309 272 FunFam Photosystem II 22 kDa protein, chloroplastic 137 242 - -
Seca4g02309 272 SUPERFAMILY Chlorophyll a-b binding protein 67 251 - -
Seca4g02309 272 Pfam Chlorophyll A-B binding protein 88 217 IPR022796 -
Seca4g02309 272 Gene3D Chlorophyll a/b binding protein domain 55 132 - -
Seca4g02309 272 Gene3D Chlorophyll a/b binding protein domain 133 243 - -
Seca4g02309 272 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 76 130 - -
Seca4g02309 272 FunFam Photosystem II 22 kDa protein, chloroplastic 55 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02309 Seca-Chr4 39299819 39302898 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02309 K03542 - gmx:100807355 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02309 4 39299819 39302898 Seca4g02309 4 39299819 39302898 ECH