Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02240 ATGCATCCTTTCTGTTGCGTCTCCGCCATTTCCGACCAGGCCTCTCCGGTCAAACCCTCGCCCACTCCTTTTCCTGACTTCACCACCATGCCTCCTCTTTCTAACGCCGCCATTAGATCCGATTCGAACAACCACAGCCACTGCCACAGTCATAGCTCCGTGAGCAATAGCGAGTACGGACGACTGAGCCAGCGAGAGCAGCCGGCGGTGGTGATGGACGTGAAGATCAACGACCTCGTCGGGAACGGAATCTCCGGGATACTGTACAAATGGGTCAATTACGGCAAAGGATGGAGACCTCGATGGTTCGTACTTCAAGACGGCGTCCTCTCGTACTACAAGATTCACGGACCTGATAAGATCATTGTGAATCCTGAAACCGAGAAAGGCTCCAAGGTTATCGGCGAAATATCCATGCGGAGGATCACACGCAACCGCGATTCTTATCCCTATCAACATCGACGAAAGCCCTTTGGGGAAATTCATCTCAAGGTTTCAACGATTCGCGAGAGCAAATCCGATGACAAGCGCTTTTCGGTGTTCACCGGGACGAAGAGGCTCCATTTGAGGGCTGAGTCACGTGAAGATCGCGTGTCATGGGTGGAGGCGTTGCAGGCAGTGAAAGACATGTTCCCACGGATGTCAAACAGTGAGTTGATGGCTCCAGTGGACAACGTAGCCATTTCCACTGAGAAACTGAGACATCGGCTTCTGGAAGAAGGAGTGAGCGAGGCAGCCATTCAGGAGAGTGAGCAAATTATGAGGAGTGAGTTTGCGGCGCTACAAAACCAACTTGTGCTGCTTAAGCAGAAGCAGTCGATGCTAATTGACACGTTACGGCATTTAGAGACAGAAAAGGTTGATCTGGAGAATACAGTGGTTGATGAGAGCCAAAGACAGTTGAATGATCAAGAGGCTTGCTATGGATTAACACAAGAAAAATTTAGTGTCAATTCAGAAGGAAGTGCGACTGAATCTGAGGATGATAATGAGAGAAATGATGCTGCAGAGGAAGAAACAGATGATGATGACAATGTCTTTTTTGATACTCGTGATATTTTATCATCCAGTTCTTTTAAAAGTAACGGGTCTGACTATAGAGTATCATCTTTCTCTTCAGATAATGAAGGGTTTTATGCATTTGAATCAGAGGAGGATGTAGATCCTTCAATTAGATATATTGGAACCAACCACCCTTATGTTAAGCGGCGTAAGAAATTGCCAGATCCTGTAGAAAAAGAGAAAGGTGTCAGTCTTTGGTCAATGATTAAGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCCCTGCAAAAGTGTTTTGAAGAAATGGAGTATTCATATCTGCTGGACCAAGCATATGAATGGGGAAGAAGGGGTAATAGCCTCATGAGGATTCTCTGCGTCGCTGCTTTTGCTGTATCTGCCTATGCTTCAACTGAAGGAAGAATTTGCAAACCATTTAATCCATTACTTGGGGAAACATACGAGGCTTACTATCCAGATAAAGGCCTTCGTTTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGGGGGGATAGCAACTTGAAGAGCAAATTTTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTATGTTGACTTTGGAATTTGACGATGGGGAGGTTTTCCAATGGAGCAAGGTTACTACATCAATATACAATCTCATATTGGGAAAGCTATACTGTGATCACTATGGTACAATGCGTATACAGGGAAACCGAGAGCACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGTATCATTCAAGATAGGAACGGGAAAGCAGTATCAACTTTGTTCGGGAAATGGGATGAAAGCATGCATTATGTTAATGGAGACTACACTGGGAAGGTGAAAGGGCATGAATCTTTGTCAGAAGCCCATTTACTATGGAAGCGAAGCAAGCCTCCCAAGTTTCCCACTAGATATAACTTCACTCGCTTTGCCATCACATTAAATGAACTTACCCCTGGATTGAAGGAGAAGTTGCCACCTACAGATTCCAGGTTAAGACCAGACCAAAGGTATTTGGAAAATGGGGAGTATGAGATGGCAAATTCAGAAAAATTGCGGCTCGAGCAGCGGCAACGCCAGGCCCGGAAGATGCAAGAGAGTGGCTGGAAACCACGGTGGTTTGCTAAGGATAAAGCAAACGGGACATACCGTTATATAGGAGGGTATTGGGAGGCCCGAGAAAAAGGAAACTGGGACTCCTGTCCTGACATCTTTGGCCAAATTCCTCCAGATCATCTTTTCGATGAAGGTCAACTTACATTTTAA 2403 0.4524 MHPFCCVSAISDQASPVKPSPTPFPDFTTMPPLSNAAIRSDSNNHSHCHSHSSVSNSEYGRLSQREQPAVVMDVKINDLVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNPETEKGSKVIGEISMRRITRNRDSYPYQHRRKPFGEIHLKVSTIRESKSDDKRFSVFTGTKRLHLRAESREDRVSWVEALQAVKDMFPRMSNSELMAPVDNVAISTEKLRHRLLEEGVSEAAIQESEQIMRSEFAALQNQLVLLKQKQSMLIDTLRHLETEKVDLENTVVDESQRQLNDQEACYGLTQEKFSVNSEGSATESEDDNERNDAAEEETDDDDNVFFDTRDILSSSSFKSNGSDYRVSSFSSDNEGFYAFESEEDVDPSIRYIGTNHPYVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGRRGNSLMRILCVAAFAVSAYASTEGRICKPFNPLLGETYEAYYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGMLTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNREHSCKLKFKEQSIIDRNPHQVHGIIQDRNGKAVSTLFGKWDESMHYVNGDYTGKVKGHESLSEAHLLWKRSKPPKFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKANGTYRYIGGYWEAREKGNWDSCPDIFGQIPPDHLFDEGQLTF. 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02240 800 Gene3D - 504 678 - -
Seca4g02240 800 ProSiteProfiles PH domain profile. 81 209 IPR001849 -
Seca4g02240 800 Coils Coil 279 299 - -
Seca4g02240 800 FunFam oxysterol-binding protein-related protein 1D isoform X1 504 676 - -
Seca4g02240 800 Gene3D - 715 776 - -
Seca4g02240 800 CDD PH_ORP_plant 84 216 - -
Seca4g02240 800 MobiDBLite consensus disorder prediction 330 345 - -
Seca4g02240 800 Pfam Pleckstrin homology domain 89 205 - -
Seca4g02240 800 SUPERFAMILY PH domain-like 85 215 - -
Seca4g02240 800 SMART PH_update 82 211 IPR001849 -
Seca4g02240 800 MobiDBLite consensus disorder prediction 39 60 - -
Seca4g02240 800 Coils Coil 723 743 - -
Seca4g02240 800 Gene3D - 82 211 IPR011993 -
Seca4g02240 800 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 83 772 IPR000648 GO:0008289
Seca4g02240 800 FunFam Oxysterol-binding protein-related protein 2A 715 786 - -
Seca4g02240 800 SUPERFAMILY Oxysterol-binding protein-like 413 790 IPR037239 -
Seca4g02240 800 Pfam Oxysterol-binding protein 418 773 IPR000648 GO:0008289
Seca4g02240 800 MobiDBLite consensus disorder prediction 314 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02240 Seca-Chr4 38166366 38172659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02240 K20456 - gmx:100137077 1377.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02240 4 38166366 38172659 Seca4g02240 4 38166366 38172659 ECH