Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02119 ATGGCGAAACAGAATCGGAGCAATGCTCTTTTGGTGATTCTATTACTCTGTGTTTCCTCTGTTTCGGTTTCAGCCAGAGTTGTGCCTCTCTTGCAGAGTTACGGGAAACCCATTTTCAGATCAAACTTTCACAGTATTTATGATACTTCAAAGTATGGTGTGCTTCAACTCAGTAATGGTTTGGCTTTGACGCCTCAGATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAATGAAACGGTCATCAAGGAAACGGCTGATGCACTGGTATCAACGGGATTGGCTGATTTAGGTTATGCGTATGTCAACATAGATGATTGCTGGTCTTCTGTGACAAGAAATTTGAAGGGTGCACTGGTACCTGATAAAAAGACATTTCCATCGGGAATCAAAGCTCTTGCAGATTACATGCATGGAAAGGGACTCAAGCTTGGCATATATTCTGATGCTGGGGTTTTTACATGTCAAGTACGGCCAGGATCGATTTTCCATGAAACTGATGATGCAGATTTATTTGCCTCTTGGGGTGTAGATTATTTGAAGTATGACAATTGTTACAATCTGGGCATCCCTCCGAAAAAACGATATCCACCTATGCGTGATGCTCTCAATGCAACTGGACATAAAATTTTCTATTCACTCTGTGAATGGGGTGTTGACGACCCTGCATTATGGGCAGGCACGGTTGGTAACAGTTGGCGCACAACCGAAGACATCAATGATTCATGGGCAAGCATGACAACTATTGCCGATCTTAATGACAAGTGGGCTGCATATGCTGGTCCTGGAGGATGGAATGACCCAGATATGTTGGAAGTTGGCAATGGTGGCATGACATACCAGGAATACCGTGCTCACTTCAGCATTTGGGCTTTAGCAAAGGCTCCTCTATTGATTGGTTCCGATGTAAGAAATATGACTGCTGAAACACTTGAGATTCTAAGCAACAAAGAAGTCATTGCTGTAAATCAAGACCCACTTGGAGTCCAGGGAAGGAAAGTTCAAGTTGCTGGAAAAGATGGTTGCAGTCAGGTTTGGGCAGGTCCTTTATCAGGGAATCGTTTGGTTGTTGCTCTCTGGAATCGGTGCTCAAAAGTCACTACTATAACAGCATCCTGGAAAGTACTTGGGTTGGAGTCTGGAATTCATGTTTCTGTGAGGGATTTGTGGAAGCACAAGGTAATAAATGGAGATGCAGTGTCATCATTCAGTGCCCGAGTTGATACTCATGATTGTCAGCTGTACATTTTCACTCCATATACAGTATCTCACTATGCAAGGTAG 1290 0.4341 MAKQNRSNALLVILLLCVSSVSVSARVVPLLQSYGKPIFRSNFHSIYDTSKYGVLQLSNGLALTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYAYVNIDDCWSSVTRNLKGALVPDKKTFPSGIKALADYMHGKGLKLGIYSDAGVFTCQVRPGSIFHETDDADLFASWGVDYLKYDNCYNLGIPPKKRYPPMRDALNATGHKIFYSLCEWGVDDPALWAGTVGNSWRTTEDINDSWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGSDVRNMTAETLEILSNKEVIAVNQDPLGVQGRKVQVAGKDGCSQVWAGPLSGNRLVVALWNRCSKVTTITASWKVLGLESGIHVSVRDLWKHKVINGDAVSSFSARVDTHDCQLYIFTPYTVSHYAR. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02119 429 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 11 421 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 Pfam Alpha galactosidase A 64 327 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 FunFam Alpha-galactosidase 57 329 - -
Seca4g02119 429 FunFam Alpha-galactosidase 330 422 - -
Seca4g02119 429 SUPERFAMILY Glycosyl hydrolase domain 322 420 - -
Seca4g02119 429 ProSitePatterns Alpha-galactosidase signature. 100 116 IPR000111 GO:0004553|GO:0005975
Seca4g02119 429 Gene3D - 330 421 IPR013780 -
Seca4g02119 429 Gene3D Aldolase class I 57 329 IPR013785 -
Seca4g02119 429 CDD GH27 65 327 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 PRINTS Glycosyl hydrolase family 27 signature 95 110 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 PRINTS Glycosyl hydrolase family 27 signature 136 157 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 PRINTS Glycosyl hydrolase family 27 signature 170 187 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 PRINTS Glycosyl hydrolase family 27 signature 197 215 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 PRINTS Glycosyl hydrolase family 27 signature 283 304 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 PRINTS Glycosyl hydrolase family 27 signature 262 281 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 PRINTS Glycosyl hydrolase family 27 signature 59 78 IPR002241 GO:0004553|GO:0005975
Seca4g02119 429 Pfam Alpha galactosidase C-terminal beta sandwich domain 343 418 IPR041233 -
Seca4g02119 429 SUPERFAMILY (Trans)glycosidases 56 328 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02119 Seca-Chr4 35928530 35935204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02119 1 426 Glycoside Hydrolase AT3G56310 71.926 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02119 K07407 - gmx:100784072 781.556