Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02118 ATGTCCATTCTTGCTTTTTCTTCTCATCTTCTGCATTATCCACTTTCTCCAATTCAGTGCTCTAAAGTTTCGACCTTTGTCCCTGGAAGCGCGTACCAACTTGAAAGGGGTTTGGAATTTGACACCGGCGGAGCATTTTACCGGCAAGAGAGCGCCACGGGCCGTGACCTCGGTGTGCTGGCAGCTTCTCTGCAGAAGAAGGCCAGTGGAAGCTTGCGGGTTATAGATGCACTGTGTGGCTGCGGAATTCGGTCGCTGAGGTATCTCGCAGAAGCAGAAGCTGATTTTGTTGCGGCTAACGATGGAAACGAGAGCTATAGAAGCACCATTGTGGAGAACTTGTCGAGGGTTTCGAGAGAAGAAGAGAAGAGATGGGTGGTTACTCATTTAGAAGCTAATCGTGTGATGACTGATTATTATCTGCAAAAGAGTTTCTTTGATTTCATTGATGTTGATTCATTTGGGAGTGATTCTTCCTTCTTGAGGTCTGCCATTAATGCTTTGAAACTTGGTGGTTTGCTTTATGTTACTTCAACAGATGGCTACTCTTCTGGTGGCCACCGTCCTCATCATTCTTTAGCTGCATATGGAGCCTATGTGCGCCCTATGCCATATTCGAATGAGGTTGGTTTGCGAATGCTTATAGGTGGGGCAGTGAGAGAGGCTGCTGTGTTGGGGTATCATATTACTCCTTTATTTTCGTACTACGCTTATCATGGACCTGTTTTCCGAGTCTTGCTCAGATTAAATCGTGGGAAGATTCATGACAGTAGGCATTATGGTTATATTGGCTATTGCCACCAATGTGGAAATTCCCATGAATTTTCTTGGGATCAACTTGGTCAGATCAGTTGCTCCTGCAGTATGCCAGAGGTATCAAAGTCCCTTGTGGTGTCTGGACCTCTTTGGACAGGGCCTCTTCATGATGCTACCTATCTTATGGACATGTTAGATCTGGCTAAGCAGTGGGGATGGATTGGCTGTGACGGTAAAGACAGTGTTGAAAAGCTTATAAAACTGATGGTGGATGAAAGTGACCCCAAGTTGCCATTTGGGTATATCAAGTTGGATGAGATGGCAAGCCGTGCAAAAATGAATTCTCCACCTCTGAAGACCTTGATGAGTGCCCTGCACCAGAAGGGTTATGCTGCTAGCAGGTCTCAGATAGCCACAAATGCAATTAAGACAAATTGTCCCATGACTGAATGCATTAGGATTTCCAAAGAACTACTGCAGGTTTCAGTCGCTTAA 1251 0.4548 MSILAFSSHLLHYPLSPIQCSKVSTFVPGSAYQLERGLEFDTGGAFYRQESATGRDLGVLAASLQKKASGSLRVIDALCGCGIRSLRYLAEAEADFVAANDGNESYRSTIVENLSRVSREEEKRWVVTHLEANRVMTDYYLQKSFFDFIDVDSFGSDSSFLRSAINALKLGGLLYVTSTDGYSSGGHRPHHSLAAYGAYVRPMPYSNEVGLRMLIGGAVREAAVLGYHITPLFSYYAYHGPVFRVLLRLNRGKIHDSRHYGYIGYCHQCGNSHEFSWDQLGQISCSCSMPEVSKSLVVSGPLWTGPLHDATYLMDMLDLAKQWGWIGCDGKDSVEKLIKLMVDESDPKLPFGYIKLDEMASRAKMNSPPLKTLMSALHQKGYAASRSQIATNAIKTNCPMTECIRISKELLQVSVA. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02118 416 PANTHER N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE 28 408 IPR002905 GO:0003723|GO:0004809|GO:0008033
Seca4g02118 416 Gene3D Vaccinia Virus protein VP39 21 346 IPR029063 -
Seca4g02118 416 ProSiteProfiles Trm1 methyltransferase domain profile. 16 407 IPR002905 GO:0003723|GO:0004809|GO:0008033
Seca4g02118 416 Pfam N2,N2-dimethylguanosine tRNA methyltransferase 45 406 IPR002905 GO:0003723|GO:0004809|GO:0008033
Seca4g02118 416 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 408 IPR029063 -
Seca4g02118 416 Gene3D - 350 409 IPR042296 -
Seca4g02118 416 FunFam tRNA (guanine(26)-N(2))-dimethyltransferase 350 409 - -
Seca4g02118 416 FunFam tRNA (guanine(26)-N(2))-dimethyltransferase 26 346 - -
Seca4g02118 416 CDD AdoMet_MTases 73 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02118 Seca-Chr4 35916430 35922373 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02118 K00555 - gmx:100788340 697.967