Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02112 ATGGCAGTGCGAGCCCTATTGAGCAGAAAAACCCTAGCCTCGGTGCTCCGCAATGATCCAAAACCAATCATCGGATTGGGCATAGCAGCAGCAGGAGGAGCTCATTCACGTGGCGTACATTCCTTCACGCTACCCGATCTCGCTTACGACTATGGCGCCTTGGAGCCTGCAATCAGCGGTGAAATCATGCAGCTTCACCATCAGAAGCACCATCAGACATACATCACCAACTACAACAAGGCTCTCGAGCAGCTCCATGATGCTATCGCCAAGGGCGATTCCTCTACCATCGTTAAGCTCCAAAGTGCCATCAAGTTCAATGGCGGAGGTCACATCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTATTCGGGAAGGAGGTGGTGAACCACCCCATGGTTCCCTGGGATGGGCCATTGACACACATTTTGGTTCCTTTGAAGCTTTGATACAAAAGATTAATGCAGAAGGTGCGGCCCTACAGGGGTCTGGGTGGGTGGTAAGTTCTGCAGATTTTGAAATTCCTAGCATGTCTTCTATGCTTGCATATAATTTCATTAGAGCTCAATGCCTCAGTCAGTCATTATTTGAGGTGCCATGTTTACTTTTACTCAATTTGTACTGCTTTGCCAGTGGCTTGGTCTGGACAAGGAGTTTAAGAAGCTTGTAG 672 0.4792 MAVRALLSRKTLASVLRNDPKPIIGLGIAAAGGAHSRGVHSFTLPDLAYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLHDAIAKGDSSTIVKLQSAIKFNGGGHINHSIFWKNLAPIREGGGEPPHGSLGWAIDTHFGSFEALIQKINAEGAALQGSGWVVSSADFEIPSMSSMLAYNFIRAQCLSQSLFEVPCLLLLNLYCFASGLVWTRSLRSL. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02112 223 FunFam Superoxide dismutase 59 122 - -
Seca4g02112 223 Pfam Iron/manganese superoxide dismutases, C-terminal domain 132 172 IPR019832 GO:0004784|GO:0006801|GO:0046872
Seca4g02112 223 PANTHER SUPEROXIDE DISMUTASE 2 34 174 - -
Seca4g02112 223 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 41 122 IPR019831 GO:0004784|GO:0006801|GO:0046872
Seca4g02112 223 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 126 173 IPR036314 -
Seca4g02112 223 PRINTS Manganese superoxide dismutase signature 105 118 IPR001189 GO:0004784|GO:0006801|GO:0046872
Seca4g02112 223 PRINTS Manganese superoxide dismutase signature 66 79 IPR001189 GO:0004784|GO:0006801|GO:0046872
Seca4g02112 223 PRINTS Manganese superoxide dismutase signature 161 169 IPR001189 GO:0004784|GO:0006801|GO:0046872
Seca4g02112 223 PRINTS Manganese superoxide dismutase signature 45 56 IPR001189 GO:0004784|GO:0006801|GO:0046872
Seca4g02112 223 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 40 123 IPR036324 -
Seca4g02112 223 Gene3D - 123 208 IPR036314 -
Seca4g02112 223 Gene3D Fe,Mn superoxide dismutase (SOD) domain 59 122 IPR036324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02112 Seca-Chr4 35831504 35836716 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02112 K04564 - gmx:100785490 291.967