Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02085 ATGAATCCTCCACCCAAATTGTTGTTAGCGCATCTGCTTCTTCTTCTTGTCTCAGCTTGTTGGGGCTTTCAACCGGAGCTCCGATCTCTGCTGGAATTCAAGAAAGGGATAAAGGAAGATCCGATGGGTCGTGTGGAGTCATGGAACCCTTCTTCCCTTGACGACTCCACCGTTTGCCCTCGCTCATGGGAGGGCATTCTCTGCGACGAAGTTACCGGCAACGTCACCGGAATCGTCCTCGACGGCCTCAAGCTCGGCGGCGAACTCAAGTTCCACACTCTCCTTGACCTAAAGATGCTCAAAAACCTAAGTCTCTCCGGGAACCACTTCACCGGAAGGTTACCCCCTTCCCTAGGCACACTCGTCTCTCTCCAGCATTTGGATCTTTCCCACAACAACTTCTATGGCCCTATTCCTGCTCGGATCAACGACCTATGGGGACTCAATTACCTCAATTTGTCCCTCAACAGTTTCAAGGGTGGTTTCTCAACAGGGCTCAACAACCTTCAACAGCTTAGGGTTCTTGATTTGCACTCTAACCAGCTCTGGGCTGACATTGAAGACCTTCTCCCCACGCTGCGCAATGTGGAGTACCTCGATTTGAGCCTCAATCGCTTCTTTGGGGGGCTTTCCCTCACCGTTCAGAATCTTTCTGGTTTGGCTAATACAGTCCATTTTTTGAACTTGAGCCACAACAACTTGAATGGCCCCTTCTTCCAAAACGATTCCATGAACTCGTTTCGCAACTTGCAAGTTTTGGATTTGACTAATAACTTGATCAGGGGGCAGCTTCCTTCTTTTGCTTCCTTGCCCAACCTTCGGGTTCTGCGACTTTCCCGTAATCTTTTCTTTGGGTCTGTGCCAGAGGAGTTGTTGCAAAATTCAGTGTCCTTGGAAGAATTGGATCTCAGCGCCAATGGTTTTACTGGCTCAATTGCTGTAATCAACTCTACAACTTTAAATTCTTTGAATCTTTCATCGAATGGTTTATCAGGCTCTTTGCCGACATCATTGAGAAGATGTACAGTCATAGACTTGAGCAGGAATATGTTTTCTGGTGACATTTCTGTTATACAGAACTGGGAAGCCACATTGGAGGTTATTGATCTCAGTTCAAACAAGCTTTCAGGATCCTTGCCTCCTATTTTAGGCACCTATTCAAAATTGTCTACCATTGACTTAAGTTTAAATGAACTCAATGGATCCATTCCAGGTAGTTTAGTTACTTCCTCATCACTGACAAGACTAAACCTTTCTGGAAATCAATTCACGGGGCCACTTCAGCTTCAAGGTTCAGGGGCAAGTGAATTACTACTTATGCCTCCTTATCAGCCAATGGAGTATCTTGATGTATCTAATAACTCCTTAGAAGGTGTCTTGCCTTCTGAAATAGGTAGGATGGTTGGGCTCAAACTGCTGAATCTGTCAAGGAATGACTTTTCTGGACAGCTTCCAAATGAAATGAGCAAACTTACTTATTTGGAGATCCTCGACTTGTCTAACAACAAATTTACTGGAAATATTCCTGATAAGCTTTCATCCAGCTTAGCTGTATTTAATGTGTCTAATAATGATCTATCTGGTCGTGTTCCTGAAAATTTGCGGCGGTTCCCTCCTTCATCCTTTCATCCTGGAAATGAAAAGCTAATGTTACCAAGTAATTCTCCTGAGACTTCTTCAGTCCCAGATAATATTCCAGATAATGGTAGACATCATAGTTCAAAGGGTAATATCAGGATAGCAATTATTCTTGCCTCTGTGGGTGCTGCTGTGATGATTGCTTTTGTTTTATTGGCTTATCATCGAACACAACTAAAAGAATTTCATGGAAGAAGTGATTTCACTGGTCAAAATACTGGAAGAGATGTCAAGTTAGGAAGGCCTTCTCTCTTCAAGTTCCATACAAATGCTCAACCCCCAACAACTTCGTTGAGCTTTTCAAATGATCACTTGTTGACTTCCAACTCAAGGTCACTCTCTGGACAGTCAGAGTTTATAAGTGAAATTTCCGAGCATGGCTTACCTCAGGGAATGGTAGCAACTAGTTCAGCATCTGTAAATCCTAATTTGATGGATAACCCTCCCATGTCATCTGGAAGGAAGTCTTCTCCTGGTTCTCCATTGTCATCCTCACCCCGTTTTGTAGAGGCTTGTGAAAAGCCAGTGATGTTGGATGTCTACTCACCAGATCGTCTGGCTGGGGAACTGTTTTTCCTGGATTCTTCACTAGCATTCACTGCAGAGGAATTATCTCGAGCCCCAGCTGAAGTTCTTGGCAGAAGTAGCCATGGCACTTTATACAAAGCTACTCTGGACAGTGGTCATATGTTGACTGTAAAATGGTTACGGGTGGGATTGGTCAAACATAAAAAAGAATTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCACCCGAACATTGTCCCTTTACGAGCATACTATTGGGGGCCTAGGGAACAAGAGAGGCTTCTCTTAGCTGACTATATTCATGGTGACAGCTTGGCCCTCCATCTCTATGGTAATAATTAA 2532 0.44 MNPPPKLLLAHLLLLLVSACWGFQPELRSLLEFKKGIKEDPMGRVESWNPSSLDDSTVCPRSWEGILCDEVTGNVTGIVLDGLKLGGELKFHTLLDLKMLKNLSLSGNHFTGRLPPSLGTLVSLQHLDLSHNNFYGPIPARINDLWGLNYLNLSLNSFKGGFSTGLNNLQQLRVLDLHSNQLWADIEDLLPTLRNVEYLDLSLNRFFGGLSLTVQNLSGLANTVHFLNLSHNNLNGPFFQNDSMNSFRNLQVLDLTNNLIRGQLPSFASLPNLRVLRLSRNLFFGSVPEELLQNSVSLEELDLSANGFTGSIAVINSTTLNSLNLSSNGLSGSLPTSLRRCTVIDLSRNMFSGDISVIQNWEATLEVIDLSSNKLSGSLPPILGTYSKLSTIDLSLNELNGSIPGSLVTSSSLTRLNLSGNQFTGPLQLQGSGASELLLMPPYQPMEYLDVSNNSLEGVLPSEIGRMVGLKLLNLSRNDFSGQLPNEMSKLTYLEILDLSNNKFTGNIPDKLSSSLAVFNVSNNDLSGRVPENLRRFPPSSFHPGNEKLMLPSNSPETSSVPDNIPDNGRHHSSKGNIRIAIILASVGAAVMIAFVLLAYHRTQLKEFHGRSDFTGQNTGRDVKLGRPSLFKFHTNAQPPTTSLSFSNDHLLTSNSRSLSGQSEFISEISEHGLPQGMVATSSASVNPNLMDNPPMSSGRKSSPGSPLSSSPRFVEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRAYYWGPREQERLLLADYIHGDSLALHLYGNN. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02085 843 ProSiteProfiles Leucine-rich repeat profile. 249 271 IPR001611 GO:0005515
Seca4g02085 843 FunFam Leucine-rich repeat receptor protein kinase EMS1 440 533 - -
Seca4g02085 843 Pfam Leucine Rich repeats (2 copies) 249 287 IPR025875 -
Seca4g02085 843 Gene3D Phosphorylase Kinase; domain 1 733 829 - -
Seca4g02085 843 FunFam Leucine-rich repeat receptor-like protein kinase 737 829 - -
Seca4g02085 843 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 222 439 - -
Seca4g02085 843 PANTHER OS07G0626500 PROTEIN 371 840 - -
Seca4g02085 843 ProSiteProfiles Protein kinase domain profile. 752 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02085 843 MobiDBLite consensus disorder prediction 680 710 - -
Seca4g02085 843 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Seca4g02085 843 Pfam Leucine rich repeat 447 504 IPR001611 GO:0005515
Seca4g02085 843 Pfam Leucine rich repeat N-terminal domain 25 69 IPR013210 -
Seca4g02085 843 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Seca4g02085 843 MobiDBLite consensus disorder prediction 537 572 - -
Seca4g02085 843 SUPERFAMILY L domain-like 445 540 - -
Seca4g02085 843 Gene3D Ribonuclease Inhibitor 218 560 IPR032675 -
Seca4g02085 843 MobiDBLite consensus disorder prediction 680 712 - -
Seca4g02085 843 FunFam Nuclear pore complex protein NUP107 23 188 - -
Seca4g02085 843 ProSiteProfiles Leucine-rich repeat profile. 171 193 IPR001611 GO:0005515
Seca4g02085 843 SUPERFAMILY RNI-like 80 425 - -
Seca4g02085 843 Gene3D Ribonuclease Inhibitor 23 206 IPR032675 -
Seca4g02085 843 SUPERFAMILY Protein kinase-like (PK-like) 755 841 IPR011009 -
Seca4g02085 843 SMART LRR_typ_2 491 515 IPR003591 -
Seca4g02085 843 SMART LRR_typ_2 270 294 IPR003591 -
Seca4g02085 843 SMART LRR_typ_2 169 193 IPR003591 -
Seca4g02085 843 SMART LRR_typ_2 247 269 IPR003591 -
Seca4g02085 843 SMART LRR_typ_2 121 145 IPR003591 -
Seca4g02085 843 MobiDBLite consensus disorder prediction 547 567 - -
Seca4g02085 843 PRINTS Leucine-rich repeat signature 491 504 - -
Seca4g02085 843 PRINTS Leucine-rich repeat signature 365 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02085 Seca-Chr4 35384781 35391226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02085 703 842 Receptor kinase-like Gene Family AT5G01890 34.752 7.95e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02085 - - gmx:100802768 1342.02