Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02072 ATGGGTGAAGATAACAGGCGCGTTGGTGGGTTTTCAGCTGGTCTGGCTGTGATATTGAATGGTGAGGACAGTAAGAAAAATTTGCCAAAAACTCGGCTTCTTTCTTGCTGTGATGATTTGGGTCAACAGTCTGTGGAGAGAACCCTTGAATATGTGTTTGGCCTCCCTAACAGATCACTGAATTCATTGACTGGTCCAGTTGACCGCAAGTTTATTCGCTCTGTCATTAGGAATGATTTCTCAAGATATAATGTGAAATCAGGTGATTCTTCTAGTGAAAGAGATGGGATTTGTGGGCCTGATATTGTAGGCCTAGAAGAATCCAGCATCTGTGGTGATATCAAAATCATCAAGTCACCTTTTCTTATAGAGAGCTTGGCGATGTTCAGTAGTGCCCGGGCTAATACTTGTGTTTGGAAAGGAAAATGGATGTATGAAATTATGTTAGAAACATCTGGCATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGCGTTGGCGATGCTGATGATTCATATGCATATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGTCAGTCATGGGTTGTCGGTGATGTCATTGGATGTTGCATAGATTTAGATCAAGATGAAATAAAATTCTACAGGAATGGCAATTCACTTGGGGTGGCATTCCAAGGAATTCGAAAAATGGGTCCTGGTTTTGGTTATTATCCAGCAATTTCTCTCTCCCAGGGTGAAAGATGTGAATTGAACTTCGGGGCTCGACCCTTCAAGTACCCAATTGAAGGATACCTTCCTCTTCAGGCCCCACCCGCTAAGAGTTACTTTGTCACCCAATTGCTACAATGCTGGTCAAGGCTGTTGGATATGCATTCAGTGGAACGAGCTGAGCATTCTTTAGCACAAAAATTGAGAAGAGTAAAGAGGTTTGATTCATTGGAAGAAATTTTCCATCCTGCCTCTCATGCTATATGTGAGGAATTATTCTCTATACTTGAAGCAGATGTTGGGAACACAGAGTATATGGTTTGGGGTCCATTGTTGTCCTTCATGTTTGAAGTTTTGGGATTGCATGCACCCCATGATTATTCAAGCTTGGATAAAGTAGTTGAAGTACTGCTACAATTTCAAGGATCGCATGTGCTGTTTGAACACATCATAAATGCCCTTTCCTGTGGTTGTAAATTAGCCTCATTAGTTCTAACTGAATGTCCTTACTCTGGATCATATTCTCACCTTGCATTGGCATGCCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACCAGATTTTGAATTTTTGTTTGAAGGTTTTCTTTCACAAAAGACTCCAAACAAACAGGATCTTGAATCAATGATACCGACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAATTAGCAAGGGGCATGGTTATAAATTTTCTAAGATCACAGAGAAAATGCCGATTGAGGAGAAGCGTAGGGACCTTTGTCGTTTAGTTATACAATTTATACCACCTACGACACCTCCCCAATTACCTGGAGCAGTATTTAAAACGTTTTTACAAAACCTTCTACTGAAGAACAGAGGAGCAGAACGAAATATTCCACCACCCGGAGTTTCTAGCAACTCGGTTCTTGTTTCAATTTATTCAGTTGTGCTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGTTGGTTAAAGAGCTGCAAAGCAGATGTTGGTTTCCTTCATAGAGGTGGTCAACAAAGTTTTCCCATACACTTATTTCTAAAGAATGATCCTCTTAGAACTGATATTTCCAGGCTTGGGGGATCATATACCCATTTATCAAAGCTGCACCCCTCAATTGATCATGAAATGGAAGTGGTTCAATGGGATGAAGGTTGCATGGATAATGAAGAAACCAGAGTGACTCATTCGGCTAGGCAGAAGCCATGCTGTTGTTCTACTTATGATTCTGATTTTACAAGAAACTTGAAGGTTCCAGCTAAATACCTGGCTAAAGGTTCTCGGGGCCATTGTAGCTCTATTCCAGAAAGACCTGCTCATGTTGCTGCTGAATGCAGTGATGGAAGTTTGAATGATGATATAACAGATAAACCTAGCTCCAGTAATCAATCTGAACCTGAGTATGGTTACAGGCAAGTGCACCATATGAAACCTGTACCAAAGGATACAAATATGTCTACAGCTATGCTACAAGAAGAGGAGCTACTTGATGCTTTGCTGTGGTTGTATCATGTTGGTCTTGCTCCAAATTTTAAGCAGGCATCATACTACATGACTCATCAGGCACAGTCAATCTCCCTTTTAGAGGAAACTGATAAGCAAATAAGAGAACGGACTTGCAGTGAGAAATTGAAGCATTTGAAAGAGGCTCGCAATGAATATAGAGAAGAGGTCATCGATTGTGTTAGGCATTGTGCTTGGTATCGCATCTCTCTATTATCTCGATGGAAGCAGCGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCAGTGTTTATCTACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGTTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTCCGTCTACAATTTTGATCAAGCGAGGGCTTGCTTCATTTGTCACTTTTGTAGTCACTCATTTCAATGATCCAAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTCCAGTCTATATCTGTTCTGGTTCAGTACAGGGAGTATTTGGCCGCTTTTGAGAGCAATGAGGCAGCCACCCAAAGGATGCCAAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATCCCAGTGACGAACATACTCCTGCGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCTTCTTCATCATCAGTTCTTTTCCAAAGGTTGCTAAAAGAAGCTTGCATAAATGATGAAGGATTGTTTTCATCTTTTCTAAACCGTCTATTTAATACACTTAGCTGGACCATGACTGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAATACCAGGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTCTAGAGTTCTGTACTCATGAGATTCCTCAAGCATTCCTGTCTGGACCAGAAACAAACCTACGGAGGTTAACTGAATTGGTTGTATTTATCTTAAATCATATTACTTCTGCAGCCGATGCTGAATTCTTTGACTTGTCCCTTAGACGGCATAACCAATCTCCAGAGAAAGTAAATCGAGGCATGATATTGGCACCTCTTGTAGGGATCATCTTAAATTTATTGGATGCTACTAATTTGGCAGAATATCAAGAAAACAATGATCTTTTGGATGTTTTTGCAAGCATGGACTGTCCAGATACTGTTCATAATGGATTCCAGTATCTTCTGGATTATAACTGGGACGGATCTTGTCGAGGGGAAGCTTATGTGGAAAAATATGAGCAGCTAGAGAATTTTCTGAGCCTCCTTACTTGCCGCACTATGCTACAGCATGATAAAGTGGATAGTGTTGAAGATACAGATCTTGATGATAGCTTGTGTTGCATATGTTATGCCTGTAAAGCAGATGCCCAGATTGTACCTTGTTCACATAGGTCTTGCTATGGCTGTATAACCAGGCATCTTTTGAACTGCCAGAGATGTTTCTTTTGCAATTCTACAGTGACAGATGTTAGCAGAATTAATGAGAAGACAGGCTAA 3843 0.4065 MGEDNRRVGGFSAGLAVILNGEDSKKNLPKTRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLTGPVDRKFIRSVIRNDFSRYNVKSGDSSSERDGICGPDIVGLEESSICGDIKIIKSPFLIESLAMFSSARANTCVWKGKWMYEIMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDVIGCCIDLDQDEIKFYRNGNSLGVAFQGIRKMGPGFGYYPAISLSQGERCELNFGARPFKYPIEGYLPLQAPPAKSYFVTQLLQCWSRLLDMHSVERAEHSLAQKLRRVKRFDSLEEIFHPASHAICEELFSILEADVGNTEYMVWGPLLSFMFEVLGLHAPHDYSSLDKVVEVLLQFQGSHVLFEHIINALSCGCKLASLVLTECPYSGSYSHLALACHLLRREELMVLWWKSPDFEFLFEGFLSQKTPNKQDLESMIPTVWWPGSCEDASYEGNMMLTTTALSESISKGHGYKFSKITEKMPIEEKRRDLCRLVIQFIPPTTPPQLPGAVFKTFLQNLLLKNRGAERNIPPPGVSSNSVLVSIYSVVLHFLSEGFALGDICGWLKSCKADVGFLHRGGQQSFPIHLFLKNDPLRTDISRLGGSYTHLSKLHPSIDHEMEVVQWDEGCMDNEETRVTHSARQKPCCCSTYDSDFTRNLKVPAKYLAKGSRGHCSSIPERPAHVAAECSDGSLNDDITDKPSSSNQSEPEYGYRQVHHMKPVPKDTNMSTAMLQEEELLDALLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERTCSEKLKHLKEARNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTILIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLAAFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLKEACINDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELVVFILNHITSAADAEFFDLSLRRHNQSPEKVNRGMILAPLVGIILNLLDATNLAEYQENNDLLDVFASMDCPDTVHNGFQYLLDYNWDGSCRGEAYVEKYEQLENFLSLLTCRTMLQHDKVDSVEDTDLDDSLCCICYACKADAQIVPCSHRSCYGCITRHLLNCQRCFFCNSTVTDVSRINEKTG. 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02072 1280 FunFam E3 ubiquitin-protein ligase RNF123 1219 1276 - -
Seca4g02072 1280 CDD SPRY_RNF123 131 259 IPR035773 -
Seca4g02072 1280 CDD RING-HC_RNF123 1226 1269 - -
Seca4g02072 1280 SUPERFAMILY Concanavalin A-like lectins/glucanases 126 275 IPR013320 -
Seca4g02072 1280 Coils Coil 804 824 - -
Seca4g02072 1280 Pfam Ubiquitin elongating factor core 761 965 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Seca4g02072 1280 SMART SPRY_3 140 262 IPR003877 GO:0005515
Seca4g02072 1280 Pfam SPRY domain 142 260 IPR003877 GO:0005515
Seca4g02072 1280 Gene3D - 114 290 IPR043136 -
Seca4g02072 1280 MobiDBLite consensus disorder prediction 713 736 - -
Seca4g02072 1280 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 23 1278 IPR045129 GO:0004842
Seca4g02072 1280 FunFam E3 ubiquitin-protein ligase RKP 112 286 - -
Seca4g02072 1280 SUPERFAMILY RING/U-box 1217 1271 - -
Seca4g02072 1280 ProSiteProfiles Zinc finger RING-type profile. 1228 1262 IPR001841 -
Seca4g02072 1280 MobiDBLite consensus disorder prediction 719 735 - -
Seca4g02072 1280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1221 1277 IPR013083 -
Seca4g02072 1280 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 131 IPR045737 -
Seca4g02072 1280 ProSiteProfiles B30.2/SPRY domain profile. 63 263 IPR001870 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02072 Seca-Chr4 35231659 35243869 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02072 K12169 - gmx:100800617 2382.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02072 4 35231659 35243869 Seca4g02072 4 35231659 35243869 ECH