Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02065 ATGTCATCCTCAGAAGAAGGTGAAACTGAAACTCAGAGTCAGAGAGAGTGCGAGTGCGAGTGCGAGTGCGACAATCTGATCCCGTCCCTTCCAAACGACGTCGCTGTGAATTGCTTAGCTCGTGTTCCTCGCTCGCAACACCCAACCCTCTCCCTCGTTTCCAAATCAATTCGCTCCCTTCTCTCTTCCCCACTCTTCTTCAACGCTCGTTCCCTCCTTCACTCTACACAGCACCTTCTCTACCTAACCCTCCGTACACGCGCCGAACCTACCCTCCAATGGTTCACGCTCCACGACAACCACCTCGTCCCCCTCCCTCCTCTCCCCTCCCCCGCCATCGGCTCCGCCTACGCCGTCCTCGGCTCCACCATCTACGTCATCGGCGGCTCCATCAACGACATCCCTTCCTCCCGCGTCTGGCTCCTTGACTGCCGCTTCCACCGCTGGCTCCAAGGCCCCTCCATGCGCGTCTCCCGTGAGTTCGCCGCTGCCGGCGTCGTCGACGGCAAGATTTACGTCATCGGTGGCTGCGTCGCCGACACGTGGGCCAGGTCCGCCAACTGGGCGGAGGTGTTTGACCCTGCTGCCGGCCGCTGGGAGAGGGTGCCGAGTCCCCCGGAGGTGCGGGAGAAGTGGATGCACGCCAGTGCCGTCGTCGATGACAAGGTTTACGCCATGGCGGATCGCGGTGGCGTGGCGTATGACCCTAAGAGCGGCGCGTGGGAGAGCGTGGGGAGCGAGCTGGACCTCGGGTGGAGGGGGAGGGCGTGCATGGTGGATGGGATTCTTTATTGCTACGATTACTTGGGGAAAATCAAGGGATTCGATGTGAAGCTAGGATTGTGGAAGGAGTTGAAGGGATTGGACAAGGGTTTGCCAAGGTTTCTGTGCGGAGCCACTATGGCTAATGTTGGTGGAAAGTTGGTTGTCGTTTGGGAATGCCAAGAGAATGGGAAGGAAATGGAGATTTGGTGCGCTGAGATTGAAGTGAACAAGAATGAGGGTGGGGAATTGTGGGGTGAAGTTGGTTGGTTCAATAACGTTCTTTCTGTTCCAAAAGGGTGCTCTATTGTCCACTGTTCTGCTGTTGCCTTGTGA 1098 0.5792 MSSSEEGETETQSQRECECECECDNLIPSLPNDVAVNCLARVPRSQHPTLSLVSKSIRSLLSSPLFFNARSLLHSTQHLLYLTLRTRAEPTLQWFTLHDNHLVPLPPLPSPAIGSAYAVLGSTIYVIGGSINDIPSSRVWLLDCRFHRWLQGPSMRVSREFAAAGVVDGKIYVIGGCVADTWARSANWAEVFDPAAGRWERVPSPPEVREKWMHASAVVDDKVYAMADRGGVAYDPKSGAWESVGSELDLGWRGRACMVDGILYCYDYLGKIKGFDVKLGLWKELKGLDKGLPRFLCGATMANVGGKLVVVWECQENGKEMEIWCAEIEVNKNEGGELWGEVGWFNNVLSVPKGCSIVHCSAVAL. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02065 365 Pfam F-box domain 28 65 IPR001810 GO:0005515
Seca4g02065 365 Pfam Kelch motif 159 206 IPR006652 GO:0005515
Seca4g02065 365 Pfam Kelch motif 115 156 IPR006652 GO:0005515
Seca4g02065 365 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 10 349 - -
Seca4g02065 365 SUPERFAMILY F-box domain 26 111 IPR036047 GO:0005515
Seca4g02065 365 SMART kelc_smart 170 222 IPR006652 GO:0005515
Seca4g02065 365 SMART kelc_smart 123 169 IPR006652 GO:0005515
Seca4g02065 365 SMART fbox_2 30 70 IPR001810 GO:0005515
Seca4g02065 365 Gene3D - 73 337 IPR015915 GO:0005515
Seca4g02065 365 CDD F-box_AtAFR-like 26 70 - -
Seca4g02065 365 SUPERFAMILY Kelch motif 90 348 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02065 Seca-Chr4 35180141 35183207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02065 30 349 Miscellaneous Gene Families AT4G33900 36.963 1.05e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02065 - - gmx:100798508 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02065 4 35180141 35183207 Seca4g02065 4 35180141 35183207 ECH