Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02061 ATGAATTCCACAGTACTCAAAATAAGTGAAATTAGAGTGTGTCAACTAAGAGAACTGTACTGCAGCTACTGCTATGTAGTTGTCCTAGTTGAATGGGTATATGTCCAATCAGACTATGATAAGATGGCAAGGACTCAAAAGAACAAGGCTACTGCTCATCATTTGGGCTTGTTGAAGGCTAAACTTGCAAAGCTGCGGAGGGAACTCCTTACACCTACATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACCAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGTTTCCCTTCAGTTGGCAAATCTACTCTTCTGAATAAGTTGACTGGGACATTTTCAGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCAAAAATTCAGTTGCTGGATCTCCCTGGAATTATTGAGGGTGCTAAGGATGGAAAAGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTAATTGTTCTTGATGCAATAAAGCCAATAACTCATAAGCGTCTTATAGAAAAAGAGCTAGAGGGATTTGGTATAAGGTTAAACAAAGAGCCACCAAACCTGACTTTTAGGAAGAAAGATAAGGGTGGAATCAATCTCACCTCAACTGTCACCACTACACATCTGGATCTTGAGACTGTGAAGGCTATATGTAGTGAGTACAGAATTCACAATGCAGATATTACTCTCAGGTATGATGCCACTGCCGACGACCTTATAGATGTCATTGAAGGCAGTAGAGTATATATGCCTTGCATCTATGTTGTAAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCCTGGATAAGCTACCTCATTACTGCCCAATCAGTGCACACTTGGAGTGGAACCTTGATGGGCTTCTGGATAAAATTTGGGAATATCTCGATTTAACTCGTATTTACACTAAACCTAAAGGGATGAATCCTGACTATGAAGACCCTGTAATTTTGTCATCTAAGAAGAGGACAGTTGAAGACTTCTGCAATCGCATTCACAAGGACATGGTTAAACAGTTTAAGTATGCTCTTGTCTGGGGTTCAAGTGCAAAACATAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTTGAAGATGAAGATGTCGTTCAGATTATCAAGAAAGTATAA 1188 0.4074 MNSTVLKISEIRVCQLRELYCSYCYVVVLVEWVYVQSDYDKMARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGAGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGINLTSTVTTTHLDLETVKAICSEYRIHNADITLRYDATADDLIDVIEGSRVYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLDKIWEYLDLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCNRIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02061 395 NCBIfam small GTP-binding protein domain 91 243 IPR005225 GO:0005525
Seca4g02061 395 SUPERFAMILY TGS-like 340 393 IPR012676 -
Seca4g02061 395 PRINTS GTP1/OBG GTP-binding protein family signature 94 114 IPR006073 GO:0005525
Seca4g02061 395 PRINTS GTP1/OBG GTP-binding protein family signature 142 157 IPR006073 GO:0005525
Seca4g02061 395 PRINTS GTP1/OBG GTP-binding protein family signature 159 177 IPR006073 GO:0005525
Seca4g02061 395 PRINTS GTP1/OBG GTP-binding protein family signature 115 133 IPR006073 GO:0005525
Seca4g02061 395 Pfam 50S ribosome-binding GTPase 93 185 IPR006073 GO:0005525
Seca4g02061 395 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 40 394 IPR045001 GO:0003924|GO:0005525
Seca4g02061 395 Pfam C-terminal region of MMR_HSR1 domain 213 318 IPR031662 -
Seca4g02061 395 FunFam Developmentally-regulated GTP-binding protein 1 310 394 - -
Seca4g02061 395 FunFam Putative GTP-binding protein 1 80 218 - -
Seca4g02061 395 CDD DRG 92 324 IPR045001 GO:0003924|GO:0005525
Seca4g02061 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 344 IPR027417 -
Seca4g02061 395 Pfam TGS domain 320 393 IPR004095 -
Seca4g02061 395 Gene3D - 39 113 - -
Seca4g02061 395 Gene3D - 156 266 - -
Seca4g02061 395 ProSitePatterns GTP1/OBG family signature. 144 157 IPR006074 GO:0005525
Seca4g02061 395 CDD TGS_DRG1 315 394 - -
Seca4g02061 395 Gene3D - 310 395 IPR012675 -
Seca4g02061 395 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 92 317 IPR031167 GO:0005525
Seca4g02061 395 ProSiteProfiles TGS domain profile. 317 393 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02061 Seca-Chr4 35097419 35106339 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02061 K06944 - gmx:100796064 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02061 4 35097419 35106339 Seca4g02061 4 35097419 35106339 ECH