Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02008 ATGGCGACAAAAGCTTTGGCCCTCGCTGTTACTCTTTCTGACCTCACAAACCCCTTCGCTTCCAAGTCGCCACACGCCGCTGCAAAAGTTTCCGTTTTTTCTGTCAGATGCTCTGCCGGTAATGGAGAAAGGCCTTGGAAAAATTCAGATGCTAGACTTGTTCTGGAGGATGGTTCCATCTGGAAAGCAAAATCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTTTTCAATACATCATTGACTGGCTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACTAATCCACATATTGGGAATACTGGCATAAATTTTGATGATGAGGAATCAATACGGTGCTTCCTTTCTGGTCTAGTAATTAGAAGTTTGAGTCCCAGTACCTCAAACTGGAGATGTGTGAAAACTCTGGGTGATTACTTAATAGAAAGGAATATCATGGGAATTTATGATGTTGATACGCGTGCAATCACCCGCAGATTACGGGAAGATGGCAGCCTTATTGGTGTCTTGAGCACTGACAATTCCAAAACAGATGAGGAACTAATTCAGATGTCTAAATCATGGGACATTGTTGGTATTGATCTAATAAGTGGAGTGTCATGCAAGTCTCCACATGAATGGGTTGATACAACAAAGCAAGAATGGGAGTTTAGTTCCAATGGAGGGCCTGGAGAGACTTTCCATGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTGGCATCCTATGGCTGTAAAATCACAGTTGTGCCATCTACTTGGCCAGCATCAGAAACTTTGAAGCTAAAGCCAGATGGGGTCCTTTTCAGCAATGGCCCTGGAGATCCATCTGCTGTTCCTTATGCTGTTGAGACAGTAAAGAATATTATTGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGCTAGGCCAGGCTTTAGGAGGTAAGACCTTCAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTACCCATGTTGAAATTAGTTCTCAGAACCACAACTATGCGGTTGACCCTGCCACACTGCCAGAAGGGGTGGAGGTTACTCATATCAATCTTAATGATGGAAGTTGTGCTGGTCTTGCTTTCCCTGCTCAAAAAGTTATGTCTCTTCAATACCACCCTGAAGCATCTCCTGGACCTCATGATTCTGACAACTGTAAGAGACTTCAAACTTTCACCGTTTATTAA 1254 0.4298 MATKALALAVTLSDLTNPFASKSPHAAAKVSVFSVRCSAGNGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESIRCFLSGLVIRSLSPSTSNWRCVKTLGDYLIERNIMGIYDVDTRAITRRLREDGSLIGVLSTDNSKTDEELIQMSKSWDIVGIDLISGVSCKSPHEWVDTTKQEWEFSSNGGPGETFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLKPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRTTHVEISSQNHNYAVDPATLPEGVEVTHINLNDGSCAGLAFPAQKVMSLQYHPEASPGPHDSDNCKRLQTFTVY. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02008 417 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 348 359 - -
Seca4g02008 417 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 276 290 - -
Seca4g02008 417 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 306 322 - -
Seca4g02008 417 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 323 340 - -
Seca4g02008 417 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 237 251 - -
Seca4g02008 417 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 198 414 - -
Seca4g02008 417 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 53 177 IPR002474 -
Seca4g02008 417 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 50 194 IPR036480 -
Seca4g02008 417 Hamap Carbamoyl-phosphate synthase small chain [carA]. 49 416 IPR006274 GO:0004088|GO:0006207|GO:0006541
Seca4g02008 417 CDD GATase1_CPSase 237 406 IPR035686 -
Seca4g02008 417 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 51 407 IPR006274 GO:0004088|GO:0006207|GO:0006541
Seca4g02008 417 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 47 402 - -
Seca4g02008 417 PRINTS Glutamine amidotransferase superfamily signature 306 317 - -
Seca4g02008 417 PRINTS Glutamine amidotransferase superfamily signature 279 288 - -
Seca4g02008 417 PRINTS Glutamine amidotransferase superfamily signature 391 404 - -
Seca4g02008 417 FunFam Carbamoyl-phosphate synthase small chain 48 197 - -
Seca4g02008 417 Pfam Glutamine amidotransferase class-I 240 406 IPR017926 -
Seca4g02008 417 Gene3D - 198 413 IPR029062 -
Seca4g02008 417 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 236 417 - -
Seca4g02008 417 PRINTS Anthranilate synthase component II signature 279 288 - -
Seca4g02008 417 PRINTS Anthranilate synthase component II signature 391 404 - -
Seca4g02008 417 PRINTS Anthranilate synthase component II signature 306 317 - -
Seca4g02008 417 SUPERFAMILY Class I glutamine amidotransferase-like 229 406 IPR029062 -
Seca4g02008 417 SMART CPSase_sm_chain_2 49 179 IPR002474 -
Seca4g02008 417 Gene3D - 49 197 IPR036480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02008 Seca-Chr4 34271091 34274534 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02008 K01956 - gmx:100806168 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02008 4 34271091 34274534 Seca4g02008 4 34271091 34274534 ECH