Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01986 ATGACAAAGTTCAGGAAGCTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGAACCATGGTCTCACAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTTGCCAAGGCTAAGGAGATCAGAAGGCTTGCGGATAATATGGTACAGCTTGGAAAGGAGGGATCCCTATGTGCTGCAAGGCGTGCTGCCAGTTTTGTGCGAGGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAGGATAGAGCTGGTGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGTGATGCTGCACCAATGGCCTATATTGAGTTCATTGATCGAGAAAATGAGCTTAGGCAGTCAAAGCCACCAACTCCTCAACAACCACAGAGAGCACCCGTTGATCCCTGGACTCGATCTCGTCTCACCAGGCAGTTTGCACCTCCAAAAGAGGAAAAATCCGATTCTGATTTGTGA 480 0.5 MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAARRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPTPQQPQRAPVDPWTRSRLTRQFAPPKEEKSDSDL. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01986 159 Gene3D Ribosomal protein L17 1 113 IPR036373 GO:0003735|GO:0005840|GO:0006412
Seca4g01986 159 PANTHER RIBOSOMAL PROTEIN L17 2 134 IPR000456 GO:0003735|GO:0005840|GO:0006412
Seca4g01986 159 Pfam Ribosomal protein L17 17 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
Seca4g01986 159 MobiDBLite consensus disorder prediction 118 159 - -
Seca4g01986 159 SUPERFAMILY Prokaryotic ribosomal protein L17 3 116 IPR036373 GO:0003735|GO:0005840|GO:0006412
Seca4g01986 159 FunFam 50S ribosomal protein L17 1 113 - -
Seca4g01986 159 NCBIfam 50S ribosomal protein L17 4 114 IPR000456 GO:0003735|GO:0005840|GO:0006412
Seca4g01986 159 Hamap 50S ribosomal protein L17 [rplQ]. 2 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01986 Seca-Chr4 33479831 33484214 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01986 K02879 - cave:132166345 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01986 4 33479831 33484214 Seca4g01986 4 33479831 33484214 ECH