Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01984 ATGAGAGGAACAATGGGTACTTCTCCTGGTGCAGCTGAAGCTAGACACCGTTTGCCTGCATCCATTGAAGATTTATACAAACGAAGACAGCCAAGAAGTAAATCGAAAGATGTAGAGAAGCCTTTCCACTTGTCAATCCAAGATAGGAGCTCAAGATGCAAGTTTTCATTCTTAAAACTTATCCTCTTGATAACCATTTGCGGCACTTTTGTAACACTCCTGTACTCTCCAGAGGTTTACAATACCAACCATTTATCAAGCTCTGGCTCTGGTCCTAATTTTGGGAACAGGTGGATATGGGGTGGCTTAGATCCTCGGTATATGTCTAATGTAGACACTGACTGGGATGATATAATGAAAATCACAAAGAAGCTGACAGGGGAAAAAGATTTTCAAGGGGTTGGACTTCTGAATTTCAACAAGACTGAAATTGGTCATTGGAAGCATATTTTTCCTGATGCTACACATGTTGTTCTGCCTTTGGAGTATGCTGCAAAAAATATGACATGGGAGTCTTTGTATCCAGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCTGTTTGTCCTTCTCTACCAAGTCTTAGACCTCCTGGTATAAGACTTAACCTCATTGCTGTCAAGCTTCCTTGTCATAATTCCTTACCCAATTGGTCTAGAGATGTTGCTCGTTTGCACCTGCAGCTTGCAGCAGCTGGCCTTGCCGCCTCTTTCAAAGGCAATTACCCTGTATATGTGCTCTTCATTACTAACTGCTTTCCAATTCCTAATCTGTTTACCTGCAAAGAACTCATTGCACATGAAGGGAATGCATGGTTATATAGTCCAAACTTGAGTGTTTTGAGAGAAAAGGTCCAGCTTCCAGTAGGATCTTGTGAGCTTGCTCTTCCTATGAGAGGCAAAGCAGAGCTGATTTACAATGGAAATGCTCCTAGAGAAGCCTATGCAACAATTCTGCATTCAGCTCATGTTTATGTTTGTGGAGCTATAGCTGCTGCACAAAGCATCCGCTTCTCTGGATCAACTAGAGACCTTGTAATACTTGTTGATGAGACAATCAGTGGGTATCACAGAAGTGGTTTGGAAGCAGCAGGGTGGAAGGTTAGAACAATACAAAGGATAAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAATTCCGGTTGTGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTGAGAAACATAGATTTTCTATTTGGAATGCCAGAAATCACTGCCACTGGTAATAATGCCACTCTTTTCAACTCAGGTGTCATGGTGGTTGAGCCATCCAATTGCACATTTCAGCTCCTAATGGATCATATTAATGAGATTGAGTCCTACAATGGAGGGGACCAGGGATATTTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGTGATGAGGAGGAAAAGAAGCAAATGAAAACTAGGTTGTTTGGTGCTGATCCTCCAATTCTCTATGTCCTTCACTACCTAGGTGTGAAACCATGGTTATGCTTCAGGGACTATGATTGTAACTGGAATGCAGACATATTTCATGAGTTTGCAAGTGATGTGGCACATTCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGGCAAGCTGAAATAGCAAACTACACAGATGGGCATTGGAGAATTAAAGTTAAAGATCGTCGATTGAAGAAATGCATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGAGTAATTGGACAGATGATGAGTTCTATAATCCAACACCACCAGCCATTACCACAGCATCTCTTCCTGCTTTATGA 1938 0.4169 MRGTMGTSPGAAEARHRLPASIEDLYKRRQPRSKSKDVEKPFHLSIQDRSSRCKFSFLKLILLITICGTFVTLLYSPEVYNTNHLSSSGSGPNFGNRWIWGGLDPRYMSNVDTDWDDIMKITKKLTGEKDFQGVGLLNFNKTEIGHWKHIFPDATHVVLPLEYAAKNMTWESLYPEWIDEEEETEVPVCPSLPSLRPPGIRLNLIAVKLPCHNSLPNWSRDVARLHLQLAAAGLAASFKGNYPVYVLFITNCFPIPNLFTCKELIAHEGNAWLYSPNLSVLREKVQLPVGSCELALPMRGKAELIYNGNAPREAYATILHSAHVYVCGAIAAAQSIRFSGSTRDLVILVDETISGYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTRLFGADPPILYVLHYLGVKPWLCFRDYDCNWNADIFHEFASDVAHSKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRRQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGESNWTDDEFYNPTPPAITTASLPAL. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01984 645 Pfam Glycosyl transferase family 8 319 525 IPR002495 GO:0016757
Seca4g01984 645 SUPERFAMILY Nucleotide-diphospho-sugar transferases 312 558 IPR029044 -
Seca4g01984 645 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 311 560 IPR029044 -
Seca4g01984 645 FunFam Hexosyltransferase 310 562 - -
Seca4g01984 645 CDD GT8_Glycogenin 313 558 - -
Seca4g01984 645 PANTHER GLYCOGENIN SUBFAMILY MEMBER 220 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01984 Seca-Chr4 33470975 33476257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01984 11 644 Glycosyltransferase AT3G18660 65.902 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01984 K20890 - gmx:100809361 1214.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01984 4 33470975 33476257 Seca4g01984 4 33470975 33476257 ECH