Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01947 ATGAAATCCAATTCTTCCTTTCTCTTATCGTTCTTCTTTGTAGCCTTAACCAGCATACAAGTTTGTATATCAGACTGTGATAATATACAGGACACTTGCCCCACAGATTCACCACCATCAAAACAGAACATATTCATCAATGGACTCACCTGCAAGAACACACCTAACACATCTGCTCATGATTTCAAGACAATGGAATTAACCAAACCTGGTTCAAGAGATGATTTTGGTTCATCAGTTAACATTGTTACTGCTTCAAAGTTCCCTGGTCTTAACACTCTTGGTCTCTCAATTGCTAGAACTGACATTGAAGTGGATGGTCTTGTTAACCTCCACAATCATCCAAGAGCTACTGAGATGGTCTTTGTCAGAGAAGGTGTGTTGGTAGCTGCTTTTCTTGATACACAAAACCAGCTTTTCCAAAAGCTACTCAGAACAGGTGATGTCTTTGTGATCCCTAAAGGGTTGTTCCATTTCTTTCTAAACCGTGGTGTAGAAGTTGCAACTGTGTTCTCTGTGTTCAATAGTCAAAATCCTGGGTTGGGATCCCTCACTGCCACACCTTCTTCTGACACCACATTGGAATCAGTTGAGAAGCTAAAGAGGAAGTTCATCTCACTTTCTGAATCAGAACTTCATAGTGTTAATGATTTGAGTTTGGCAATGTTGGACATCATTTACAGTTAG 687 0.4003 MKSNSSFLLSFFFVALTSIQVCISDCDNIQDTCPTDSPPSKQNIFINGLTCKNTPNTSAHDFKTMELTKPGSRDDFGSSVNIVTASKFPGLNTLGLSIARTDIEVDGLVNLHNHPRATEMVFVREGVLVAAFLDTQNQLFQKLLRTGDVFVIPKGLFHFFLNRGVEVATVFSVFNSQNPGLGSLTATPSSDTTLESVEKLKRKFISLSESELHSVNDLSLAMLDIIYS. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01947 228 PRINTS Germin signature 175 190 IPR001929 GO:0030145
Seca4g01947 228 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Seca4g01947 228 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Seca4g01947 228 CDD cupin_OxOx 25 204 IPR001929 GO:0030145
Seca4g01947 228 Pfam Cupin 76 196 IPR006045 -
Seca4g01947 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 187 - -
Seca4g01947 228 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Seca4g01947 228 SMART Cupin_1_3 65 201 IPR006045 -
Seca4g01947 228 Gene3D Jelly Rolls 24 212 IPR014710 -
Seca4g01947 228 FunFam germin-like protein subfamily 2 member 1 24 219 - -
Seca4g01947 228 SUPERFAMILY RmlC-like cupins 70 201 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01947 Seca-Chr4 32716990 32717676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01947 5 180 Miscellaneous Gene Families AT3G05930 37.079 9.78e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01947 - - ccaj:109807530 322.783