Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01946 ATGGAATCGGACAAGCCATCAACCTTTGGTCCTATCGTTTTTGGATCCTGTACTAGACCTTCATGGGCCCTATTATTTCTCTTCTTCACTCTATTCACCATCTTCTCCCTTCAGCTTTCCACCATCTCTCTCTTCCCTCTCTCGCTCCTTTCCGCTTCCACCGGATCCCAACCCTCGCCGGATCAGACCACCACGTGTTCCGGTTTTTTCCGGGACGTTCCCCGGAGGAAGCTCGTCATGTCGATCGAGGATTTCGGTGGCGTTGGTGACGGGAAGACTTTGAACACCGAATCGTTTCGAAGGGCGATTCAGTACATGCAGCGTTTCCGGGAAAAAGGTGGGTCCCAGTTGAATATCCCCAATGGAAGGTGGCTCACTGGTAGTTTTAATCTCACCAGTAATTTCACGCTTTTTCTTCAGGAGGGTGCTGTTATTTTGGGCTCTCAGGACCCTAAAGAATGGCCTATAATTGAACCATTGCCATCTTATGGAAGAGGGAGAGAGAGGTTGGGAGGAAGACATATTAGCCTTATACATGGAAATGGCATCCGCAATGTTGTCATCACAGGACAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGATCTTTGGTGGAACAGAACATTGGAGTACACAAGAGGCCACCTCCTTGAACTAATCAACTCGGATAATATTCTCATAGCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTAGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGATTCAAGTACCAATGTATGTATTGAAGATAACTATATAGAAAGTGGAGATGATCTTGTAGCCATTAAGAGTGGTTGGGATCAATATGGAATCACCATGGCCCATCCAAGCACAAATATCATAGTGAGGAGAGTTTCTGGCACCACCCCAACTTGTTCTGGAGTAGGAATAGGCAGTGAGATGTCTGGTGGAATTTCAAATGTTACAATTGAGAATTTGCACGTGTGGAATTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGGGGCTATATAACAAATGTTAGTATAAGTGATATAAGAATGGAGAGGGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAACGATCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTTAAGGATATTGTATTCAGTAATGTTGTCAGTGTAAATTCAACAAAAGCTCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTATGTTTCAAAAATATTACTCTGCTTGGTGTGGCCTCATCTGCAAAATGGCATTGTGAATATGTGGTTGGTTTTGCCACTGAGGTGTTCCCTGTTCCATGTCCTCAATTGCAGAACAATGGCAGTTCATCATGGTGTTCACCTTCCTGA 1449 0.4438 MESDKPSTFGPIVFGSCTRPSWALLFLFFTLFTIFSLQLSTISLFPLSLLSASTGSQPSPDQTTTCSGFFRDVPRRKLVMSIEDFGGVGDGKTLNTESFRRAIQYMQRFREKGGSQLNIPNGRWLTGSFNLTSNFTLFLQEGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNGIRNVVITGQNGTVDGQGKMWWDLWWNRTLEYTRGHLLELINSDNILIANLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMAHPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNVTIENLHVWNSAAGVRIKSDKGRGGYITNVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDIVFSNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLLGVASSAKWHCEYVVGFATEVFPVPCPQLQNNGSSSWCSPS. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01946 482 PANTHER PECTIN LYASE-RELATED 44 477 - -
Seca4g01946 482 Pfam Glycosyl hydrolases family 28 176 455 IPR000743 GO:0004650|GO:0005975
Seca4g01946 482 Gene3D - 71 459 IPR012334 -
Seca4g01946 482 SUPERFAMILY Pectin lyase-like 75 470 IPR011050 -
Seca4g01946 482 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Seca4g01946 482 SMART pbh1 336 357 IPR006626 -
Seca4g01946 482 SMART pbh1 247 273 IPR006626 -
Seca4g01946 482 SMART pbh1 308 330 IPR006626 -
Seca4g01946 482 SMART pbh1 274 306 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01946 Seca-Chr4 32711286 32715292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01946 1 480 Glycoside Hydrolase AT4G33440 66.805 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01946 - - gmx:100814190 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01946 4 32711286 32715292 Seca4g01946 4 32711286 32715292 ECH