Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01942 ATGCAATGCATTCTTTGGTTAACGGTGCACCATTCTTACCATGTTTATGAATGTTTGCATACCAACTGGACATTGCAGGTCCTAGATTTTCCTGGAGGAATGGTGAAATTCATCCCTGAAATGAGGTTTATATCTGAATCACCTCAAGAAAGAACACCCTGCTACCGTGTCCTTGATGACAATGGGCAGCTGATTTTGGGTAGTAATTTTGTTCAGGTCAGTGAGGAAGTTGCTGTCAAGATGTATAATGACATGGTTACACTCCAAACTATGGACACTATCTTCTATGAAGCACAAAGGCAAGGTAGAATATCATTTTATGTAACAACAATCGGGGAAGAGGCTATTAATATTGCATCAGCTGCAGCTCTTACCATGGATGATGTTATTTTCCCTCAGTATAGGGAACAGGGAGTCTTGTTATGGCGTGGTTTTACTCTGCAAGAATTTGCAAACCAGTGTTTTTCTAATAAATATGATAACGGGAAAGGAAGGCAGATGCCAGCCCATTATGGGTCCAACAAGCACAATTACATTACTGTAGCATCAACTGTTGCTACTCAAATTCCCCATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCATGTGCTGTCACTTACTTTGGAGATGGTGGCTCAAGTGAGGGAGATTTTCATGCCGGATTAAATTTTGCTGCTGTTACGGAGGCCCCAGTTATTTTTCTATGCCGGAATAATGGATGGGCTATCAGCACCCCTACATCAGATCAGTTTCGAAGTGATGGTGTTGTTGCGAAAGGACAAGCATATGGAGTTCGTAGCATCCGTGTAGATGGCAATGATGCCCTTGCCATTTATAGTGCTGTTCAGGCTGCTCGTCAAATGGCAATTAGTGAAGAGAGACCAGTTCTAGTAGAAGCTCTTACATATAGAGTAGGACACCACTCTACATCTGATGATTCGACCAAGTATCGTCCCGCCAATGAAATTGAATGGTGGAGAAATGCACGTGATCCTGTGGCTAGATTTAGAAAGTGGCTAGAAAGGAATGGTTGGTGGAATAGTATGGCTGAGTCAGAGCTTAGGAACAGTTTGAGACAGCAGCTTCTGCATACAATTCAGGTCGCTGAGAGTATAGAAAAACCTCCGCTTGCAGACATTTTTAATGATGTTTATGATGTCCCTCCGTCCAACCTCCGTGAACAGGAGCAATGGCTGAAGGGGACTATAAAAAAACATCCACAAGAATACCCAGCAGATATTCCTGTGTAG 1263 0.4276 MQCILWLTVHHSYHVYECLHTNWTLQVLDFPGGMVKFIPEMRFISESPQERTPCYRVLDDNGQLILGSNFVQVSEEVAVKMYNDMVTLQTMDTIFYEAQRQGRISFYVTTIGEEAINIASAAALTMDDVIFPQYREQGVLLWRGFTLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYITVASTVATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAGLNFAAVTEAPVIFLCRNNGWAISTPTSDQFRSDGVVAKGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLVEALTYRVGHHSTSDDSTKYRPANEIEWWRNARDPVARFRKWLERNGWWNSMAESELRNSLRQQLLHTIQVAESIEKPPLADIFNDVYDVPPSNLREQEQWLKGTIKKHPQEYPADIPV. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01942 420 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 53 415 IPR029061 -
Seca4g01942 420 Gene3D - 24 418 - -
Seca4g01942 420 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 26 418 - -
Seca4g01942 420 FunFam 2-oxoisovalerate dehydrogenase subunit alpha 24 419 - -
Seca4g01942 420 Pfam Dehydrogenase E1 component 85 379 IPR001017 GO:0016624
Seca4g01942 420 CDD TPP_E1_PDC_ADC_BCADC 81 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01942 Seca-Chr4 32615381 32620269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01942 26 258 Acyl Lipid Metabolism Gene Families AT5G09300 82.833 9.20e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01942 K00166 - gmx:100779198 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01942 4 32615381 32620269 Seca4g01942 4 32615381 32620269 ECH