Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g01873 | ATGTGTCGTCGAAGCTTGTCCAAACTCATCCTCAGAACTTCAGGTTTAAGGTTAGGGTTTCTGAGACGATCGTTCTCATCTGAGCCGGGGAAGAGGTTCGCAGCGTTGTGGGGGAACGGCGATTACGGGAGATTGGGTCTGGGCAATTTGGATTCTCAATGGAGGCCTGCCGTTTGCCCCGCCTTCCACAACCAAACCCTCAAAGCCATTGCTTGTGGCGTAACAGCTTTCTTTATGCTACTCGATGGCTACAATGTCAGAGTCTTTGAAAATGACAATGGATGCGTTTATGCTGCTGGTCTCAATGATTTCGGACAGCTTGGTATATCAGAGAGTACATACTACTCAGTGGATCCACTTCAAGTTTTTGGACATGAAAAGAAAATTTTGCAGATCTCTGCAGGTTATAATCATTCTTGTGCAATAACAGTGGATGGAGAACTATTTATGTGGGGAAAGAATACAAATGGGCAGCTTGGACTTGGAAAAAGGGCTCCAAACATAGTTCCTTTGCCAACTAAAGTGGAATACTTGGATGGAATCACCATTAAAATGGCTGCTCTGGGTTCTGAGCACTCAGTGGCTATTAGTGATGGAGGAGAGGCCTTTAGCTGGGGAATGGGAGTGTCTGGTAGACTTGGTCATGGCCATGAGTCCAGCATACTAGGATTCTCCAGAAGTTACAGTGAGTACACCCCAAGGCTTATAAAAGATCTTGAGGGAATCAAGGTAAAATATGTGGCTGCTGGGATGCTAAATTCGGCTTGTACAGACGAAAATGGTTCTGTTTTTATATTTGGAGAAAGAGGGATTGACAAATTGCGTTTGAAGGAGACGAGCAATGCAACAAAACCATCCTTGATTAGTGAACTTCCATACTCAGATGAAGTTGCTTGTGGTGGCTATCACACCTGTGTCTTGACAAATTCCGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATCGGTTCCTCAGATGCCATTTATCTACCTGAAAAGGTTCAAGGGCCATTCTTGAAGTCTTCTGTCAGCCAGGTTTCTTGTGGTTGGAAGCATACAGCAGCCATTTCTGGTAATTTCTTGCCTTCAATCAAAAAGAAAAAGAATTACCATTATGTACTCTTTTCTTGTTGA | 1146 | 0.4389 | MCRRSLSKLILRTSGLRLGFLRRSFSSEPGKRFAALWGNGDYGRLGLGNLDSQWRPAVCPAFHNQTLKAIACGVTAFFMLLDGYNVRVFENDNGCVYAAGLNDFGQLGISESTYYSVDPLQVFGHEKKILQISAGYNHSCAITVDGELFMWGKNTNGQLGLGKRAPNIVPLPTKVEYLDGITIKMAALGSEHSVAISDGGEAFSWGMGVSGRLGHGHESSILGFSRSYSEYTPRLIKDLEGIKVKYVAAGMLNSACTDENGSVFIFGERGIDKLRLKETSNATKPSLISELPYSDEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDAIYLPEKVQGPFLKSSVSQVSCGWKHTAAISGNFLPSIKKKKNYHYVLFSC. | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g01873 | 381 | PRINTS | Chromosome condensation regulator RCC1 signature | 300 | 318 | IPR000408 | - | |
| Seca4g01873 | 381 | PRINTS | Chromosome condensation regulator RCC1 signature | 186 | 202 | IPR000408 | - | |
| Seca4g01873 | 381 | PRINTS | Chromosome condensation regulator RCC1 signature | 202 | 216 | IPR000408 | - | |
| Seca4g01873 | 381 | PRINTS | Chromosome condensation regulator RCC1 signature | 33 | 49 | IPR000408 | - | |
| Seca4g01873 | 381 | PRINTS | Chromosome condensation regulator RCC1 signature | 146 | 162 | IPR000408 | - | |
| Seca4g01873 | 381 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 311 | 363 | IPR000408 | - | |
| Seca4g01873 | 381 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 37 | 163 | - | - | |
| Seca4g01873 | 381 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 93 | 142 | IPR000408 | - | |
| Seca4g01873 | 381 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 310 | 360 | IPR000408 | - | |
| Seca4g01873 | 381 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 145 | 196 | IPR000408 | - | |
| Seca4g01873 | 381 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 200 | 252 | IPR000408 | - | |
| Seca4g01873 | 381 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 37 | 74 | IPR000408 | - | |
| Seca4g01873 | 381 | Gene3D | - | 221 | 364 | IPR009091 | - | |
| Seca4g01873 | 381 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 146 | 199 | IPR000408 | - | |
| Seca4g01873 | 381 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 200 | 260 | IPR000408 | - | |
| Seca4g01873 | 381 | Gene3D | - | 30 | 220 | IPR009091 | - | |
| Seca4g01873 | 381 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 261 | 310 | IPR000408 | - | |
| Seca4g01873 | 381 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 94 | 145 | IPR000408 | - | |
| Seca4g01873 | 381 | SUPERFAMILY | RCC1/BLIP-II | 88 | 363 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g01873 | Seca-Chr4 | 31353353 | 31364416 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g01873 | - | - | vun:114196144 | 606.675 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca4g01873 | 4 | 31353353 | 31364416 | Seca4g01873 | 4 | 31353353 | 31364416 | ECH |