Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01809 ATGAATTTTTTGAAGTGGGGTTTCGTTGCCCTTCTCTGTGCTGCTTTTGTTTTTACAATTGATGCTCTGAAGATGGGTGGGAATCAACCCACTGAGAGAATTTCAGGTAGTGCTGGTGATGTGTTGGAAGATGATCCAGTGGGAAGGTTGAAGGTTTTTGTTTATGAACTTCCAAGCAAATATAATAAGAAAATTCTGCAAAAGGACCCAAGATGCCTCACTCATATGTTTGCTGCCGAGATCTTCATGCACCGGTTTCTCTTATCTAGCCCTGTCCGAACACTTAATCCTGAAGAAGCTGATTGGTTTTATACCCCTGTATACACCACCTGTGACTTGACACCAAATGGCCTCCCTTTACCTTTCAAGTCACCTCGAATGATGAGAAGTGCCATACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCTGATCATTTCTTTGTGACCCCTCATGACTTCGGTGCATGCTTCCATTACCAAGAAGAGAAGGCCATTGAAAGAGGAATTCTTCCATTGCTACGGCGTGCTACCTTGGTTCAAACATTTGGACAGAGGAATCATGTGTGTTTGAAAGAGGGTTCAATTACCATTCCCCCATATGCTCCACCACAGAAAATGCATACGCACTTAATTCCTGAAAGTAATCCCAGGTCCATTTTCGTTTACTTCCGAGGACTGTTTTATGATGTTGGAAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCAGTGTGGGAGAACTTCAAGGACAATCCACTGTTTGACATTTCCACAGAGCATCCAACCACATACTACGAGGACATGCAGCGAGCTGTCTTTTGTCTGTGCCCACTTGGGTGGGCCCCATGGAGCCCAAGATTGGTTGAAGCTGTGATATTTGGTTGCATCCCAGTTATTATTGCAGATGATATTGTTCTGCCATTTGCTGATGCAATCCCATGGGAAGAGATAGGTGTATTTGTTGATGAGAAGGATGTTCCCCAGTTAGATACTATACTCACATCTATCCCACCAGAAGTCATCTTAAGGAAACAAAGATTGCTTGCCAACCCTTCCATGAAGCAAGCTATGCTATTCCCACAACCTGCACAACCTGGAGATGCTTTCCATCAAGTTTTGAATGGGCTTGCGCGTAAATTGCCGCATGACCGGAGTATATACTTGAAACCAGGGGAGAAGGTCTTGAATTGGACTGCTGGACCTGTGGGTGACCTTAAACCTTGGTAA 1251 0.446 MNFLKWGFVALLCAAFVFTIDALKMGGNQPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVTPHDFGACFHYQEEKAIERGILPLLRRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHTHLIPESNPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSIYLKPGEKVLNWTAGPVGDLKPW. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01809 416 Pfam Exostosin family 49 344 IPR040911 -
Seca4g01809 416 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 48 383 IPR004263 GO:0006486|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01809 Seca-Chr4 29962072 29965939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01809 K20870 - gmx:100800085 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01809 4 29962072 29965939 Seca4g01809 4 29962072 29965939 ECH
Seca4g01809 4 29962072 29965939 Seca12g06379 12 155754018 155758070 PCT