Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01717 ATGGCGGCCACCGCTTCCACTTCCAGATCCCCATTCTCTTCTTCATACTCCAATTTCCAGAAACACAATGTTAGATTCACCTTCCCTTTCTCTCCCACCATTCTCCACAAACCTAACTACCACTCTCATTCCCTCGGAATCTCATGCTCCCTCTCCAAACCCACTGCAGCAGCTGCTTCCACCGCCACCCCCACCACTACCACCACCGTCGAGCCTTTCACTTCTCGGTTCCCCGCCGGCGAGCCAAGAAAAGGCGCTGACATTCTTGTGGAGGCGCTGGAGCGTCAGGGCGTGACCAACGTCTTCGCCTACCCCGGCGGCGCCTCCATGGAGATCCACCAAGCCCTAACACGTTCCACAACCATACGTAACGTGCTTCCACGCCACGAGCAGGGTGGAGTGTTCGCCGCCGAGGGCTACGCGCGCTCCTCTGGACTCCCCGGCGTTTGTATCGCCACCTCCGGCCCCGGCGCCACCAATTTAGTGAGTGGCCTCGCCGACGCCATGATGGATAGTGTCCCTCTCATCGCCATTACCGGTCAAGTTCCTCGGAGAATGATCGGCACCGATGCGTTCCAAGAAACCCCTATTGTTGAGGTAACAAGATCCATCACGAAACATAACTATCTCATTCTTGATGTCGATGACATTCCTAGGGTTGTGAAAGAGGCGTTTTACGTTGCAACTTCTGGGAGGCCGGGCCCAGTTTTAATTGATGTGCCTAAAGATGTGCAACAACAGCTCGCGGTTCCTGATTGGGACCAGCCCATTAAGCTCACTGGGTACCTTTCCAGGTTGCCCAAGAAGCCCAGTGAGGCCCAGTTGGAGCAGATTGTGAGGTTGATAGTTGAATCCAAGAAACCCGTTTTGTATGTTGGGGGTGGTTGTTTGAACTCTAGTGAGGAGTTAAGGCGTTTTGTGGAACTTACTGGGATTCCTGTTGCTTCTACTTTGATGGGTCTTGGTGCTTACCCTACTGCGGAGGAGCATTCCCTTCAAATGCTTGGTATGCATGGCACTGTTTATGCTAATTATGCTGTTGATAAGAGTGATTTGTTGCTTGCTTTTGGGGTCAGGTTTGATGACCGTGTCACTGGGAAGCTTGAGGCTTTTGCTAGCAGAGCTAAGATTGTTCACATTGATATTGATTCTGCTGAGATTGGAAAGAATAAGCAGCCCCACGTGTCGGTTTGTGCGGATTTGAAGTTGGCCTTGCAAAGCATTAATGAGATCTTGGAGAGTAAGGGGATCAAGGGGAAACTTGATCTTCAAGCTTGGAGGGAAGAGTTGAATGTGCAGAAACAGAGATTCCCTTTGAGTTACAAGACATTTGAGGATGGAATTTCCCCTCAGTATGCTATTCAGGTTCTTGATGAATTGACAAATGGAAATGCCATTGTTAGTACTGGAGTTGGACAGCATCAAATGTGGGCTGCTCAATTTTACAAGTACAAGAGACCTAGGCAGTGGTTAACATCAGGGGGTCTTGGGGCTATGGGTTTTGGATTGCCTGCTGCAATTGGTGCTGCTGTTGCTAACCCTGATGCAATTGTGGTTGATATTGATGGTGATGGTAGCTTTATTATGAATGTTCAAGAGCTGGCCACTATAAGAGTGGAGAATCTACCCATTAAGATCTTGTTGCTGAATAATCAACATTTGGGCATGGTTGTTCAGTGGGAGGATAGATTCTACAAGTCCAATAGAGCTCACACTTATCTGGGTGACCCATCTAAGGAGGAAGAGATTTTCCCAAACATGCTCAAGTTTGCAGATGCTTGTGGAATACCAGCAGCTCGTGTGACAAAGAAGGAGGACCTTAGAGCAGCAATCCAGAAAATGTTGGACACACCCGGTCCTTACCTTCTTGATGTCATTGTGCCCCATCAGGAGCATGTCTTGCCTATGATTCCCAGTAATGGATCCTTCAATGATGTGATAACTGAGGGTGATGGCAGAACGAAATACTGA 1971 0.4906 MAATASTSRSPFSSSYSNFQKHNVRFTFPFSPTILHKPNYHSHSLGISCSLSKPTAAAASTATPTTTTTVEPFTSRFPAGEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSTTIRNVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADAMMDSVPLIAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLILDVDDIPRVVKEAFYVATSGRPGPVLIDVPKDVQQQLAVPDWDQPIKLTGYLSRLPKKPSEAQLEQIVRLIVESKKPVLYVGGGCLNSSEELRRFVELTGIPVASTLMGLGAYPTAEEHSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCADLKLALQSINEILESKGIKGKLDLQAWREELNVQKQRFPLSYKTFEDGISPQYAIQVLDELTNGNAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIVVDIDGDGSFIMNVQELATIRVENLPIKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSKEEEIFPNMLKFADACGIPAARVTKKEDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFNDVITEGDGRTKY. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01717 656 Gene3D - 73 266 - -
Seca4g01717 656 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 82 645 IPR045229 -
Seca4g01717 656 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 84 247 IPR012001 GO:0030976
Seca4g01717 656 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 470 625 IPR011766 GO:0003824|GO:0030976
Seca4g01717 656 SUPERFAMILY DHS-like NAD/FAD-binding domain 269 438 IPR029035 -
Seca4g01717 656 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 446 648 IPR029061 -
Seca4g01717 656 FunFam Acetolactate synthase 268 439 - -
Seca4g01717 656 NCBIfam biosynthetic-type acetolactate synthase large subunit 84 648 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Seca4g01717 656 Pfam Thiamine pyrophosphate enzyme, central domain 276 407 IPR012000 GO:0000287|GO:0030976
Seca4g01717 656 FunFam Acetolactate synthase, mitochondrial 438 655 - -
Seca4g01717 656 CDD TPP_AHAS 448 639 IPR039368 GO:0030976
Seca4g01717 656 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 79 259 IPR029061 -
Seca4g01717 656 FunFam Acetolactate synthase 79 261 - -
Seca4g01717 656 CDD TPP_PYR_POX_like 87 242 - -
Seca4g01717 656 Gene3D - 275 439 - -
Seca4g01717 656 Gene3D - 440 626 - -
Seca4g01717 656 ProSitePatterns Thiamine pyrophosphate enzymes signature. 507 526 IPR000399 GO:0000287|GO:0030976
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01717 Seca-Chr4 27844209 27846179 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01717 K01652 - gmx:100782250 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01717 4 27844209 27846179 Seca4g01717 4 27844209 27846179 ECH