Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01710 ATGAGAAGACCGTCGAAACACCCAAACAAGAAGCACGACCTCTTCGACGGTTTACCGGACGATCTCGTCGTCTTCATTCTCTCCAAGCTAAGCTCAACCGCTTCTTCTCCTGCAGATTTCATCAACGTCCTCTCAACATGTAAGAGACTGAACCAATTAGGGCTGCATCGCCTGGTATTGTCCAAAGCTGGGCCCAAAGTATTCTCCATAAGGCCCAAAAATTGGTCAGAGTGCGCTCACCGTTTCCTCAAACACTGTGTTAACGCCGGTAACGTGGACGCCTGCTATACACTAGGAATGCAGATCCGGTTTTACTGTCTGCAAAACCGAAAAAGTGGACTTTCGTTGATGGCGAAGGCGGCGATGAAGTTGCACGCGCCGGCGCTGTACTCGTTGGCGGTGATTCAGTTCAACGGCAGCGGAGGCAGTAAGCGCGACAAGGATCTACGCGCTGGTGTGGCACTGTCGGCGCGGGCGTCTCTTCTCGGCCACATCGACGCGCTTCGGGAGTTAGGTCATTGTCTGCAAGATGGTTATGGCGTTCGGCAGAACGTGGCAGAGGGACGGCGACTGCTTGTACAGGCCAACCTTCGTGAGCTTGCGTTGGTCTTACGCGCTGTGGCAAGAGCGTCTCCTTCACGCTCCACTTCCTCGCTGCTAAGGGACGCGACGTGTCCGTTGCTGAGCGACTTTGAGTACAGTGTGTCGGTGCCGGAGGTGCATCCCGCGAACTGGTTCCTGAGGGAGTGGTTCGAGTCGGGTTTGGGAGAGCTGAGTGAGGGGTTGAGGCTTTGCGCGCACATTGGGTGCGGGAGACCCGAAACGCGGCCGCATGAGTTTCGGCGGTGTTCGGTTTGTGGCAAGGTCAACTATTGCTCGCGCGGGTGTCAAGCGCTTGATTGGAAATTGCGCCACAAGATGGAGTGCTCGCCGATGGAATTCTGGGTTGAAGAGAACGGTGGTGGTGGTGGTGCTGCTGCTGCTGTTGTTGGTGGCGATGACGGTGGTGGTGGTGCGGGCATGGGAAATAACGTACTGGTCCAGAACGCTGCCGTTTGA 1059 0.5619 MRRPSKHPNKKHDLFDGLPDDLVVFILSKLSSTASSPADFINVLSTCKRLNQLGLHRLVLSKAGPKVFSIRPKNWSECAHRFLKHCVNAGNVDACYTLGMQIRFYCLQNRKSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKRDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQNVAEGRRLLVQANLRELALVLRAVARASPSRSTSSLLRDATCPLLSDFEYSVSVPEVHPANWFLREWFESGLGELSEGLRLCAHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKMECSPMEFWVEENGGGGGAAAAVVGGDDGGGGAGMGNNVLVQNAAV. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01710 352 CDD F-box_SF 18 53 - -
Seca4g01710 352 Pfam MYND finger 270 309 IPR002893 -
Seca4g01710 352 SUPERFAMILY HIT/MYND zinc finger-like 263 313 - -
Seca4g01710 352 Gene3D Tetratricopeptide repeat domain 60 217 IPR011990 GO:0005515
Seca4g01710 352 Gene3D - 257 313 - -
Seca4g01710 352 FunFam Predicted protein 257 313 - -
Seca4g01710 352 ProSiteProfiles Zinc finger MYND-type profile. 267 309 IPR002893 -
Seca4g01710 352 SUPERFAMILY HCP-like 79 195 - -
Seca4g01710 352 PANTHER MYND DOMAIN-CONTAINING 6 324 IPR044508 -
Seca4g01710 352 SUPERFAMILY F-box domain 6 88 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01710 Seca-Chr4 27774239 27776705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01710 - - gmx:100820040 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01710 4 27774239 27776705 Seca4g01710 4 27774239 27776705 ECH